Protein Info for mRNA_5988 in Rhodosporidium toruloides IFO0880

Name: 14356
Annotation: K06111 EXOC4, SEC8 exocyst complex component 4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1277 transmembrane" amino acids 826 to 846 (21 residues), see Phobius details PF04048: Sec8_exocyst" amino acids 72 to 234 (163 residues), 37.4 bits, see alignment E=1.1e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1277 amino acids)

>mRNA_5988 K06111 EXOC4, SEC8 exocyst complex component 4 (Rhodosporidium toruloides IFO0880)
MSAFTTAGQRRADGRRGGLADQGFDVPSSRRGPGASGSSSPELAQKSPETARSGKVALNP
HEYPDTPAFREVDDVLRKVRDEWPELDEGEFDPVSLALHLLEPARRGSAAERDPSRSANG
TRQNLPSFLRLKGQLDHAIRSTLSPQLNPTSSGNAYRAYESAITTHNATLGALTNAQKMI
AGMRTGLGSTREKLEGTGREGLAGMYARMGMLEEMGSMLDEIDSLMRLPPSLEALLAEKR
FLGAVVLLVRSIKALHKPEMLEIGALSDLRAWAVAQEGVVLEILIEELHNHLYLKSFYCD
VRWKSYARGQTQLPLVDFGEDAEPTPSATASREPNTSFQAHSSGRSTARLPRLSKLQRFL
QNLALKPSGADPALDEAFEDLLLDPADAVDGDDGLGGSLSLGAGEGLDGFGASATPSGTK
ARREAQKRRNPELDSFSYIEMLIESLAALGKLGYALDAVGQRVQGEMFALVEATIEEVEE
RNDSSRPFANTAGAARPASSLYNPPSPNPNASSSGTFTALGASASASAAAAAAGSWATEG
VASLLRLSASETNTLASSVETLRDLFWTLYSKLDAVLQGFRVSYEVASRISERRDFKDAS
IVRTSSGNLLFSLLEVWKSVQQEVRALLHDYLTDDQSGTVSSRNPIVSVNEVLRFPRPRD
GSKQVFRFAESDLQASHKLLKDYEDALNMAIKAAVPGLITDGAPSTTTTSALIVASTDPS
AAAGRSTGLNNTHKALVPADAFNVSVLFGPTLAFLDRVKEVMPGGLMGEDETSASTGFNG
FLDEFVLRTFLPQLEEKVASVFHQAVGGIDAFQEDPNSKRVSRVPIVRSVSNLMLLISAL
CSMLRATPFHRENYSQLIVSVIHQFYQRCFERFKDLAARETTDSNSAAPSGSTLGPLKMA
ATWADMPELHACLTELRGVTPGDVGQMRQVLAKETKIELDRKRNGFVKEDDLISPSKKLS
ALATLYSSLDWFIHRVSSLKSAEGTPAAFSNGFSGPLGARRPRESAYSIASTDTGHSLGS
REMEDEAADDRPEGFALPLTSVMTKPFEALLRSYRQLADMVLFTLRLEIRLRTMHYLDKA
TRDGVYQLAEDIQEPDPSVVDLNSNLAECDEIAASTLTEGERKYIFEGLSLLMDQLLVHN
ARFIRLANHFGQAKMLRNILALQQNLKNLGDSPLDVDFDRSRRFWDLFTLGPKTMLDMVR
KGEVSYDFDDLKALLNLQCGVDQSGKDGSAPNGASLGASGGAGDVPLSGGADRNRRQYNE
FLIELFSLDPTGGMADD