Protein Info for mRNA_5999 in Rhodosporidium toruloides IFO0880

Name: 14367
Annotation: KOG1064 RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1303 transmembrane" amino acids 749 to 764 (16 residues), see Phobius details amino acids 1044 to 1059 (16 residues), see Phobius details PF12234: Rav1p_C" amino acids 578 to 1206 (629 residues), 552.3 bits, see alignment E=8e-170

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1303 amino acids)

>mRNA_5999 KOG1064 RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily (Rhodosporidium toruloides IFO0880)
MPSLVLQESAVGAPENGPHSVAAALVDCKPVLVTAVGDRVDLLDEGCKLVQGLLLEEAFP
GQAGEGKVDAVAVDVSSGRIAAVSRRRLAVWTSGRGQSWRIHSSFAVSHDVQAIDFVKGM
IVVAGEGVTLWSLDERGALPAWTRVGSLPPNRQVSLARLSPSPLVLATVAPTSSAVVLTN
VLPASSTSANRLSFRSRAIHSVRIRSVSWRPSDDIADSGPVLFTQTIDGVFRVWGCVIDE
PDFFSLWTSLDVHSTLPKQLPLATMYWRTRPMERTQHPERGGTEDDFVTVFSDGSVHLTT
VSNFDCRPPTCLTQTTEILQENVFQPHELPNFRYPHLLPSRSDPASFHLIGRSSRGTFVH
SRATVPTSRLVAATKPVFRGSPVAPSVSVVGRIRQLRPTLKGDGEAVLVLGENGRIQSWE
MGDDEVVTESFVADAHLPPDAKIATWRGGRVIASASGDRVQVLKFRRSGRLRFITATKSP
VSMDDALTFFVVRTNEDSLSTTIVGVTSESVIRTWIYHYPSKSLTDGPAHDLGSTHYVLA
SPVPIEPGLEVVDEVSVVLLDEEGTLHRWSTRLSEPYEGWYPDGTVKTGLKRVQAIACSW
DGTSAFVSLEDDDRPRLSIWDPKASEFSSGEQFSQPLEDPLVKLEWSVDGRTLAVAAAKE
VSLWCAQRLDDLTGRPSWTTYATVRIDDVLPAPITNVRWLATGLAVAAADHLFFYSSKLD
TGHQDAHRLAASLCAPLPLHHPQLLFQALLQGLFDVVVKVLVGLAAELTMDGHLTPVPMK
EGVQKLTLDAFLRNPHRSTKKKSASHDIFAALTTSGSSSSSSDPRPTLSADDVSRLLAAL
RRRSLHGLNKLDHEHLAVLVQTVFETQSRTLALDDNGVRFLISMRSFFLYNKSPASPPSS
TPSVNQKPTARLRYRDMVWAFHSENQDVLLEECTKASGGKLTWAAARTLGVALWIKSPEV
LVRTIESIGRTEFSKPDAEDRDPISAMLFYLALKKRHIVTTFWKQASGHAEQRQMIKFLS
NDFDEPRWKSAALKNAFALMSKQRFLFAAAFFLLGGSLKDAVSVCIRQLDDFQLAIALAR
TYEGGDDGPVLRSLLEETVVPLAFAKGYRWLGSWALWMLGRRDLAVQIIVTPLSDLATRL
PYKLEVVSSPAREDPALVFLFAQLRSWSLQTVKGAIAVPGKTEFNFVLHISRILCRMGCH
VLALNLLRTWQFAPPSASSAPRRPSLLGAHTRRHSLLLSSTKLDISLPPSNMPSRVASPA
PVQAEGEDTEERERQRKQFREVVKTVRVEAKAPAEFSFDAFNF