Protein Info for mRNA_6003 in Rhodosporidium toruloides IFO0880

Name: 14371
Annotation: K14792 RRP5, PDCD11 rRNA biogenesis protein RRP5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1560 PF00575: S1" amino acids 565 to 637 (73 residues), 31.6 bits, see alignment 2.6e-11 amino acids 655 to 727 (73 residues), 22.1 bits, see alignment 2.5e-08 amino acids 959 to 1028 (70 residues), 32.1 bits, see alignment (E = 1.8e-11) amino acids 1055 to 1125 (71 residues), 55.7 bits, see alignment 7.8e-19 PF05843: Suf" amino acids 1451 to 1546 (96 residues), 32 bits, see alignment 2.1e-11

Best Hits

Predicted SEED Role

"SSU ribosomal protein S1p" in subsystem Ribosome SSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1560 amino acids)

>mRNA_6003 K14792 RRP5, PDCD11 rRNA biogenesis protein RRP5 (Rhodosporidium toruloides IFO0880)
MAGKTRTTQAHGPRAASRPFKAPSSSQPPRRTASTTQSSKPALAGGKKRTREGREDEPEK
AVVTQSSLSLLNQPDEIDFPRGGGTGLTQREVREAQLEGEAEAMDDGNDEDRERQKETEV
IKDKGKAKRRKLERALNGEVKAKNQIPKDAFRVEHLNYKRLIPGTKVLCQVVQVRPLEVT
VSLPNQLLGHIPITNISSEFTARLEKAGEEDSDEEEEEESDEEDELAADKGLPGLPALFH
TGQYLIAVVTSTAVSDPTKPKLAGREGDETVRSSRRVELSVEPEKVNEGIAKGDLKRGFV
LPAAVHDVEEKGYTLSFGLPPLSAFLPFADAKKLAPKGLHVGQVVVCRLTKIHSNERTVS
VAVEWADIASTTLDSVSSITSLLPLQIVPALVTAVMPQGLNVKFHGYYDGTIDRFHLPIS
AGEDIAQHYKEGQKVKGRILWDSISQTPKKFALSMREEVVRLDESRVKALQSEWVVGRKC
QAKIVAVDEEWGLTCEIVGDEPVSAFVHISRITDDHLSTIPKAGPWQIGTVHPARVVSLS
PLDSLVQLSLQPSILSQSFLRVQDVRVGEEVKGTVKVLRDNALFVSIGGSVDGVVWPLHY
ADIRLKHPEKKFKPGQAVKARVFSVDPEKNRVVLTLKKQLLQTPHPLVTTLSEAKPGLVT
DATVTKVLDKSVLVDFFGGVRALVPAAEAAEAFTDVADLGRMFPLGKVVAVRILSVDRAS
GRIVASARQASAPAASTSSSSAIESIDVGTLTTGTISALHETNLVLSLAEGGIKALLAYP
TLARHRGVSVETLKGDLAKGQKLEDLVVVSKNVDKGFVIVGLVPSKSAAATAAASSSAAS
TSQPQLTFDRLEVGALYPGRVTSSLSSGVVLVQLVGSRNASLRGRVALTELSDDYSLVSE
KGEALFPVGTNVQAVVLAKDDEQRRLDLSLRASRVLSAQDKPLASPPADAPVTSVDDLKP
GSKVRGFVKNVANAGVFVELGRDITARVLIKELFDEYVKEWKPRFKVGELVEGKILSVDK
VSSQIEMSFRSSAVVKKDASAPTSVSLADANLSRGQVVRGTIKRVQNYGVFIRLDESGVE
GLCHKSKIVDDEKRSWKEVVREGQKVKAVVLSVDLEKKKLSLGLKKSLFPEGEVSEDEED
EMVGAELDDEEEMVSAGEDDEDEDEDEDENAGGDSDGESVDLQAMLAQAQAGGSDEDDEM
SEAEAPVASTSKLPATKAAPALAVKAGFSWGDDDEDAAMDEADKESDDEEEEEEAPKPSA
TAAGKKPANGLTALDDRTGDLDTQAPTSVADFERLLLGSPNSSYLWIQYIAFFVGLSQLD
KAREIGQRALKTINFREEGEKLNVWVALLNLENSYGDETTLETLFKEAAQRNDAKTVHLR
MIDIYERTGKYEAEEELFKKTVKNFSHSSKVWTLFAQFYLTHGRPAEARELLPRSLKSLE
KRKHVKTITKFAQLEFKMGDAERGRTIFEGIVDSYPKRLDLWFVYVDMEIKQRNVVGVRA
LFDRILAQRLSSKKGKSVFKKWLSFEKDFGDEEGVEAVKERAVAFVQSRQGGGDEEGDEE