Protein Info for mRNA_6034 in Rhodosporidium toruloides IFO0880
Name: 14402
Annotation: K14561 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 52% identical to IMP4_YEAST: U3 small nucleolar ribonucleoprotein protein IMP4 (IMP4) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
KEGG orthology group: K14561, U3 small nucleolar ribonucleoprotein protein IMP4 (inferred from 64% identity to lbc:LACBIDRAFT_311694)Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (284 amino acids)
>mRNA_6034 K14561 IMP4 U3 small nucleolar ribonucleoprotein protein IMP4 (Rhodosporidium toruloides IFO0880) MLRRQARQRREFLYQKSLEQKEQQIWQRKQAVKDLLAKGKQVPRGHGAGEREMRMDAAQD APLTHIDDEYAQAGIEDPRVLITTSRDPSSKLQQFAKELRLCIPNSTRINRGNYVMSELS DACRANQMTDLIVVHEHRGVPDALMLSHFPHGPTVLFTLTGVVLRHDLGGLQGTTISEAY PHLIFEGFGSKLGKRVQDVLKYIFPVPKDDSKRTLAFVNEGDFISFRHHVFVKTSHKEVQ LAEVGPRFEMRPYEIRNGTIEQQEADVEWVLRPYMRTGRKRNQL