Protein Info for mRNA_6042 in Rhodosporidium toruloides IFO0880

Name: 14410
Annotation: ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 516 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 33 to 54 (22 residues), see Phobius details amino acids 74 to 96 (23 residues), see Phobius details amino acids 116 to 131 (16 residues), see Phobius details amino acids 294 to 310 (17 residues), see Phobius details amino acids 316 to 335 (20 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (516 amino acids)

>mRNA_6042 ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257 (Rhodosporidium toruloides IFO0880)
MPRFSSSFRFLTFVQSLASAGCSRRPSLASMSVIAWLCWGPLSLLPLAGLLFAHWDHIAA
ASSTWRYRDWISSTAYWIVISWFNLIVWPCSAWLVFPRQAAWIARQEVKSKIAVKAVVRR
LRACFAASRMYRLRFRLKMAMWFRQRRATTLERSKVEAEMRALERNLNSHILRLHHLLAP
YRHAQSAHGTHQMLYRHVVVPNHLIDELVMRLVVVEQAWLRLLAASQHDLAQAHAYLRLQ
ALEDPPVGDTLPFLGLKRDGWGVIRQRVMRCAQDEVAKQWQLVELPKHFLGQRWTRMQAT
AALVLLSLVLRLLRRFFLGTIFGLPVWELLVYFFFKTIQFAPSQLDEPVEFAGDLFLASV
TVAIFSRPFKTTDLDTVLFDILNSSAALRAFTLAEGNLHDAILDAVLARNELKQRMRELR
GDKREAGSFAPLRHLSTFSLAPSSLRASDSALSLEWSFQCNAAEYRCLSCETSVRREKRA
DEIAPSRFERLEERQIRCLRAVKHTKCACQSYEATG