Protein Info for mRNA_6060 in Rhodosporidium toruloides IFO0880

Name: 14428
Annotation: K14806 DDX31, DBP7 ATP-dependent RNA helicase DDX31/DBP7

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 942 PF00270: DEAD" amino acids 232 to 372 (141 residues), 76.4 bits, see alignment E=3.8e-25 amino acids 417 to 473 (57 residues), 29.8 bits, see alignment 7.3e-11 PF00271: Helicase_C" amino acids 651 to 737 (87 residues), 54 bits, see alignment E=3.1e-18 PF13959: DUF4217" amino acids 804 to 863 (60 residues), 64.4 bits, see alignment 1.4e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (942 amino acids)

>mRNA_6060 K14806 DDX31, DBP7 ATP-dependent RNA helicase DDX31/DBP7 (Rhodosporidium toruloides IFO0880)
MTDELVLNFSPPSASSPSSAPTRSGGRKGGRWTDRAKERKRSQIEARKASRGTGTGANGQ
QGQGQGQGVKRSREDEGGEERGEGAGGAKRERTTGGAPPAQGGKRRLDMAVGPSGKKQYI
SSLFTAEGLPSTAADSSTSSAAPVVPSKPSNAPLMSVPSTETPNDEEDEGEAEEGPDPAP
ELSKLGLMRELVAGLSGKLGITGPTACQAGAIPRLVPPPSTSRSKGKGRASGTDFAHDAI
LRAQTGSGKTLTFLLPMLQDLLTLPPSSLPTPPSSGAKPNGADRSIGTLALILAPTRELA
SQIHTVLSTLLSSLPSSSPDPNRPFTISPRALTAGLLVGGANRTHEKRRLRKGCPIVVAT
PGRLLDHLKTTEAFRLAGEARRAKEGAPKGRPGNPNTVALGTRGAGGAGAGEGKVGLRWL
IVDECDRLMDLGFEEQMKGILEELARRSPPSSSSGPRRRTILCSATASEGVDRLAGMAIS
DQSADEGGKGMVVVGAREDVRVKEPERRDLTQGPAGAKRDEDRAEDDDDEREEPDESVAA
ESAALALPSGFTPPSQLQHNYIVVPPKLRFVTLVALLRKLLVKASSANGGRGMKVLVFMS
CTDAVDFWWKALGKMKMGTSSTDDADEEEEEEEDKKAESARLVSLHPLLPSTPIYRLHGS
LPLQTRLSSLSAFSSPYTIEDGKRKGSQTDAGVLLCTSVAARGLDVKNVGCVVQVDAPTE
GGVTEYVHRVGRTARAGAQGTAYSFILPSESAYTSFLEDGINSSSASATKGKKVRMREVG
VEQVLREGYGGEGREYETRATDVQMGFERWVNASEETASLARKAFQAHIRAYATHPSSEK
HIFNTKALHLGHLAKSFGMREAPGAHTGSSSKKGGSNKKARLSAGGARARDDEGGFEVGP
RKRKAMDAEQRMKKLMRGPQALGASEFHIAGNDMLEGVVKRK