Protein Info for mRNA_6063 in Rhodosporidium toruloides IFO0880

Name: 14431
Annotation: KOG0519 Sensory transduction histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1287 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF00512: HisKA" amino acids 715 to 781 (67 residues), 40.1 bits, see alignment 4.7e-14 PF02518: HATPase_c" amino acids 862 to 989 (128 residues), 63.7 bits, see alignment E=3.4e-21 PF00072: Response_reg" amino acids 1151 to 1249 (99 residues), 48.1 bits, see alignment 1.8e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1287 amino acids)

>mRNA_6063 KOG0519 Sensory transduction histidine kinase (Rhodosporidium toruloides IFO0880)
MSQLHRTLVGLASSSSSSSSAASHDSLHPHTDAPCIIHDMQVSVALGPQANERYSAPASR
RGSQDDFNSASTTPAGPSTLANGATHGLNGVQPTRDARDAAGTAQNGSQTERTEAKGSAA
LVDGTAKVSTAGEDEEESFAEWLSRYRVGRAGASDETPAPPPAIRAILEGRDHQNGSGAS
STSSRRPSLVQQPSATSTASLASTSSSLPSLNALTAETLLEFYRQKGHFPAPPGPYEEER
LRLAHKYGLDQPSRRKAIDRICALAKAYFKTSSVVISLTFDDYQVLGAERGFGPKEPAFD
SPPRPLDLPPAFCTHAMLASYRDPHAVFIVPDADQDWRFKGNPYNVKNGGGLSFYAAANV
HLPVSSPKREKGLPPTLASGALCLIDPTPRAAETFSTEERQVLTDFAEIISREFQLGFEQ
RRREVEAEQTAFIGRFLREALVLPCQPESLLPSSHSAALKGSRASRRSRPRPSASSGPVP
PPSTTTADSTSESPAESLFAVAARQFRTLTYAGSSAILDLRSFRPSSPSPRPLHHPKERN
GQQHFISAPSSPTSSPSLPVDGQQASPPLRPPPQTGGQTEGAKSQNRGSVALMGYNGDVD
WTDALRSREKEDKLLQAVEETLEAYYEEATDSPEASSIDAEAFVRLGLIPAASAGASFVV
PVFDSDGSPVILLVVTSGEKWFSFEPTDRQFAASVGAIVVGSLLRQRALEADKAKLHFVS
QVSHELRTPLHGCNSQLELMREFASPLELRKLTPLLDAADVCLESLSDVLNDVLDFSKLD
HAAAVASPRDIAEMHRRALVQTDLAALVEGVAKSTWVRKQRVDLVSEDLAKGEPDGKSDE
KGQVDLLLEVEERRNGWQALVDVGGLKRVLFNIVGNALKFTRKGEVKIILQDLGAVSSPS
SPTTTSNNEPPTERHLVMLSVSDTGIGMADDFMRNASYLLPFRQADPFVTGAGLGLSIVD
TILKRMGGKLDVSSQLGAGTLMRITVPLDFIPTSTSPNNDSPLPRLRTRNISAELRHFLQ
HGPSSLLASRSTTRSRAASLSLPVDGTAMSLSPLPATPALGKVDFDAAVAATAATFPLPQ
PISSDSAIPSQPWPLGAKAGPEDLVVDATKLSLASATAGLSSEDTSISGLQAQRDLQPST
ATQSRTRQVKVLVAEDNPIARNILVKLLSGKNIPFAAAQDGQEAVELFAAGDGTFTLFLA
DVQMPRLDGVAASYKIRRLEAERGWRRCKIIALTGLSSDVDMQKALREGGPIDQWLVKGG
KSLRVILDEIANLQKELDEAEGVVSLA