Protein Info for mRNA_6080 in Rhodosporidium toruloides IFO0880

Name: 14448
Annotation: KOG4379 Uncharacterized conserved protein (tumor antigen CML66 in humans)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 PF04969: CS" amino acids 324 to 402 (79 residues), 25.9 bits, see alignment E=8.4e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (700 amino acids)

>mRNA_6080 KOG4379 Uncharacterized conserved protein (tumor antigen CML66 in humans) (Rhodosporidium toruloides IFO0880)
MARIPPSADTLSFPTTPSLLNPHFESYKLASPPRGDDAVTTFPMPRAFKTPALPDHARLS
YNEVSDRGRFNHLQAGKEGEVLFVDGEGVVTAVQVDKATAQPIFHTLLQLPLPPSSQSLV
PEYPAALPLASSRWVITDGRGSLYLVRVDRSKEEWTGEIEASFRLEQEDTPFRLHAAEQL
NDDEAILLLSVVVKEAGKPETQSPLAPSTSLGSTARRPIPSTTSFHYLSARIPLRPSNAS
IPQVMKVDWRLKGQDLPSYVSFDAAAGRFVVGSTSRLVQMEAEEKKDAEAEAGEGEDVAM
GDEEESSGQAGGQATGAAAPKPPPFSWIQDKDSITVAFPIPSDTPTSSIRVTFSRQFVSL
HVASAAAALASSSPVSTAALPHISHKKLWDDILPHQSVWTFDREAEGRNSSYGLLTLHLE
KANAGTRWSDVFASTKVPTDDPSNAKIVELDPQQEYEDIPETLDPSELAAITERMEQWAQ
GIMKGGLAHSEEGLGSGIPTSLMGDEIDVEVDAESGRPFIVTWIEEATKAGAPRLVCPHP
SVPYSLLSTAIPLASPAPADPTITIKHDVDGLLFAPPSSSDTYRWSHQSTFPALAFVLAT
KRDTRFVYHYSTRACLAFDAPALLPGPQTTRHNLSGGNLFAYFAPPVGRTRETKGTQMVV
RVGGPGSGALMGVAAVELDGGETAVLALCEKELVVLRILS