Protein Info for mRNA_6107 in Rhodosporidium toruloides IFO0880

Name: 14475
Annotation: K14401 CPSF1, CFT1 cleavage and polyadenylation specificity factor subunit 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1587 PF03178: CPSF_A" amino acids 1231 to 1552 (322 residues), 247.2 bits, see alignment E=1.4e-77

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1587 amino acids)

>mRNA_6107 K14401 CPSF1, CFT1 cleavage and polyadenylation specificity factor subunit 1 (Rhodosporidium toruloides IFO0880)
MAPLTAIHRSAVPPSGASLAVSCTLAPPSPNSNARRARGHLVTARNNVVRVYEVVENGSA
GEQTLPTPSSSSRRFTLSHLITRRLPGTITAIEAVKTLSTKRDGCERLLVAFEYAKMSLM
EWSEEAHDLVPVSLHTFEKLPQVDDSRPTLLAVDPTPPISSTSSSSTSLTRLAALLLPTN
TGGDGTLALLPFFGEELDWEGLGLQDARAADDSEELGIPYAPSHLLPLAALTASSTHATT
SLTSAARSSTLPSASTSIASNAFTATSTGPPPIRNVSSISFLPGFTEPTLAILYAPEQSW
AGRVEHLQTNFLVSLVTLSPALKRDPGEKGAGGEEEPPTRAVVISTSPSLPYTSLSLHPT
PYPSPLPLGGTLVLTSNSILHVDQSGRIVGVKANHWAGRDWPAGPTARKPPGMEDDARLD
PSLGERGEGLEGAAVEFLSPLSPAHDGEGEVPRALVWCRSGAVLQLSFTLTGRAVSALKL
EKVADAGAVAGGGSSVLRRLEGAGAEGEGEGAVFVGSETGSSAVVRWTRGGAQRQVEKRE
EERNGAVDGMELEDEDDIYGDSTTSSSAPSAPAQQTPFSLPSFRRLAPTPSTTSAPSSTG
TADDRFRLEVCDTVQGYGAVRGLVSGLVDDESPAEIVAATGAGKTAGLTIFRRQIYPTSR
RALHLPSTAAPPTDPSLEPSAFVPTVGLWRLKLAPRVMGEGEGREEVWVGSDKERSLFYR
PFPGSTPATTAALQLVHEEPDVSTLAAFTMAGGQVVVTVSREAINLYDQDLNALQNLALP
VPLHAVAHHPHVTSTSSHLVIHAPSTATGGARARTTPLIYHLDASTLQLLPLDSVLPANE
ADDTRLGKRAAVFRDQLDLVPLARPAAKKAKKQVNGGGVIALDAMEEDEEDLYGGSAKVE
TKANGVNGTSEAAPGGEVEMDRVVRLQEMGGGAQDRWEWLAEVDAKGDLKIRLLPSGTEI
FSSSAVTLLPEVIEDGVEDRLIADNIDQDDVKVERVFVANIGRNGREKVHLMILLTSGQL
AVYEAFPSLSAVPDSFAPTSDASSPSPPRLAARFVKTLVRHLPSAPLRRKGAAAASDLPS
PRRDFLPFSSIGGHAGVFLSGEEAFWLLKGDHGPARCFESSDRGVYGVVELGGGQQQDER
GGPVEGDELAMQTREGLSIARLPPALSLDTVIPYTHIPKDRVYGHLAFDLDSGMYVGATL
HRTRFVAFDEEGNPLWKEHAPELLEPMNYRSTLELLVPGSWQAIHGHEFRQNEFVTSMKS
VSLASKSTRTGTRDFIAVGTAIHRAEDLATRGGIYVFEVVQINPHPATPHLDHQLRLLFF
EDAKAAVNNVCDLNGYLFLSMGQKLYARAFEQDEFLLAVGFLDVGVHVTSLTALKNFLLI
GDEQQSISLVAFQEDPYKLVMLGRDYRPSRVEGSNFIVNEGKVAFVSNDDKGVLRLFEYD
PTNIASHAGQRLMCRTEYHAGAESIASTLFAKHLPNEDAKQSGILYGGLDGSLFTLVPVR
DAVFRRLQSLQTLMSRYVLHFGGLNPRAYRIVKNDTVSRAIVKGILDGDLLAALEMLPLE
RQVELAEAVGTDADTVLANLRNLRGFE