Protein Info for mRNA_6113 in Rhodosporidium toruloides IFO0880

Name: 14481
Annotation: K17263 CAND1 cullin-associated NEDD8-dissociated protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1290 PF08623: TIP120" amino acids 1103 to 1263 (161 residues), 195.1 bits, see alignment E=1.6e-61

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1290 amino acids)

>mRNA_6113 K17263 CAND1 cullin-associated NEDD8-dissociated protein 1 (Rhodosporidium toruloides IFO0880)
MAKSSYAVSQLLTKLKNPDADLRFMALQDLQTESRSPSFGIDDATEYALVDQVLGLVRDV
NGEVKGGAVRTLSTLVPHLSPARIQTTIDCLVALTSDPDDGVRDIASLGLKMVVGEVQPG
TALAQTCCQRLAPEVVKLLGDPSSSAELVLDSLDLLSDILSRFETTIRTLPAIQSSILKA
STPLLSHGRAAVRKRTVSTLAVLIPSAASADVFDKLVTGTVLPALKGSDEEQLRTAVSLV
GALARSAPRLIGPKAGELVPLVLKAAERDDDEAKEGVLQCLEGFVLRCPAETGGQLSAIV
DKAVELLKYDPNFAGGAGDDEDEEMAGASDDDDAFGDEDDEEEFEDEYDDEDDTSWKVRR
SATKLLTACISTRADLLANFYRTVSPALIARFGDREETVRVEVWATYTALLKQTKVVTRP
HAAQQQGQCTNGGASPRGHLKRKRDEDQMDTEGEASPLAQLQAQTPTVAKSIVKQLTVAK
SIPTRQAGFVLLHELVAVLEGGGLETQIPALVQRVEAALKTSDSGLSGAATSLKIEVLSF
LALFFRTHHVKTFSDELAKLVPLIANAIGDRFNKIAAEAFLTASELIKVLRPVSTSSQPA
QLTPAHVAHLSTIYEATMKKLTGSDADEEVKGKGMQTLGTLLYHSGDYAPGDHLAASLAF
LRDRLRNEVQRVTAVTVVGQVAASPVLKPGAFEAVDTWAQECLPEVSALLRKVHRPLKIA
AFDALDALLARGDGAVSADTAQAIVNDLAPLLAANSGSAAGDINLVPHALLTLSNLLAAS
PSDETVGLVEEVALPRVLELIASPILSAAATSTATGHSNPVVDALTHFFPSLVKAGSDAG
ELIAQLSEAGKGAAQTGPGAVVAKCIGAVVVEKPGEAAKVVKENEKVVKSAKASPNALIL
ALLTLGEVGRVVDLSSHKAAFTKVVEHFSSQSEDVRRSAAYSAGNVAVGNPSAFLSTILD
LIQSDDKKRYLALQALKEVIIHSSTESLAAISDQLWTPLFENCEAQEEGTRNVAADCLGQ
LTVINPAKYLPQLQTRLSSDSRHTRATVIAALRFTFTNDSTTYDELLAPLIVEFFKLMHD
EDLGVRRLALSSLNSAAHNKPYLVRSHLDSLLPELYAQTVVDESLIRMVEMGPFKHKVDD
GLDIRKTAYECMHSLLDTCLKEIDLQAYLSQVISGLSDEDEVKKLCYVMLTKLAHVAPTA
VSQRLDETVPAFTETLGIVLKDNAVKQEAERTLELQKSAIRTLAVLNRISSSASTPKFSN
FISNTVATGKMASEFKESSRQSQAVAMDLD