Protein Info for mRNA_6137 in Rhodosporidium toruloides IFO0880

Name: 14505
Annotation: KOG2227 Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 687 PF13401: AAA_22" amino acids 168 to 302 (135 residues), 30.3 bits, see alignment E=4.8e-11 PF00004: AAA" amino acids 169 to 307 (139 residues), 31.7 bits, see alignment E=1.9e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (687 amino acids)

>mRNA_6137 KOG2227 Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase (Rhodosporidium toruloides IFO0880)
MLGKRTRQDAPLVPSKRSLTAYIPSTKPHAAAGDVKAGASVAMGRTESQKENCAVQVGSE
DAVMDVEQDKCALDELFVLPTPPVSFELPEPPLNDCSHAPSPAPEPSTSRGIPNIYTHAS
SLLTPSSSLASSLPLTGRTDQHETLLAFLTRRFPAVYGSTSSRPGPAAMYVSGPPGIGKT
ALLSSTIAAFRELVKERRCEEEVSVLVENCATIAETGSVWERLGRGLGMEMDMGGERSAR
RAKEAFEEGLKDGRKFLLVLDEIDHLVSPSSSTASSSSYQPDLLSSLFALASTPASPLTL
IGIANDLTLKALALPTLSPVAAGKGKAKADPLHTPTKPIRVHFKPYSWQELVAIVAQRLS
LLTPQYPLDLDDASTANPATEPPAAGKKATYPLIDKPALERCAKKVAAGTGDVRTMLDVV
RRAIALVAADQSSNPTVSSLSTFTPLTAPKASMKHVSAALAASAGLTAAPTLAARLAALQ
GGPHQRVALVSVVVAISRIDPSQPGLDRSSTPEGLRVVLDEAYRVYREIVAREDVLRAQA
LDASAYAETVGMVEDLGGFVVVRGRPGSSPSTSPSTSGGRVKRTPTPTKTKKHERGKMTV
ELSPTSPLGELVAILASPPAEGKEADEDETSRLMRRVIERERADQRWAVKRRSLGRDEDK
RAEEMLEGREWEKKVLAGGRKTGEADE