Protein Info for mRNA_6146 in Rhodosporidium toruloides IFO0880

Name: 14514
Annotation: K02925 RP-L3e, RPL3 large subunit ribosomal protein L3e

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 PF00297: Ribosomal_L3" amino acids 1 to 368 (368 residues), 620.2 bits, see alignment E=6.3e-191

Best Hits

Swiss-Prot: 80% identical to RL3_ASPFU: 60S ribosomal protein L3 (rpl3) from Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)

KEGG orthology group: K02925, large subunit ribosomal protein L3e (inferred from 82% identity to ppl:POSPLDRAFT_115865)

Predicted SEED Role

"LSU ribosomal protein L3e (L3p)" in subsystem Ribosome LSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (390 amino acids)

>mRNA_6146 K02925 RP-L3e, RPL3 large subunit ribosomal protein L3e (Rhodosporidium toruloides IFO0880)
MSHRKYEHPRCGSLGFLPRKRAARHRGKAKSFPKDDAKAPVHLTAFLGYKAGMTHVVRDL
DRPGSKMHKKEVVEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYK
NWYRSKKKAFTKYAKKHAEQGSASSVARELERITKYCTVVRVLAHTQIRKTGLAQKKAHL
MEIQVNGGSVADKVEFAKSHFEKTVDVSSIFEQDENIDVIGVTQGHGFEGVTHRWGTKKL
PRKTHKGLRKVACIGAWHPSKVMYSVARAGQDGYHHRTELNKKVYRIGKADDEGSASTEF
DITKKAITPLGGFVRYGVVKNDWVMIKGSCPGVVKRVLTLRKSLVPHTSRASLEKISLKL
IDTSSKFGHGRFQTKEEKDAFIGQLKVKSA