Protein Info for mRNA_6152 in Rhodosporidium toruloides IFO0880

Name: 14520
Annotation: HMMPfam-Slx4 endonuclease-PF09494

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1061 PF09494: Slx4" amino acids 993 to 1049 (57 residues), 44.3 bits, see alignment 7e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1061 amino acids)

>mRNA_6152 HMMPfam-Slx4 endonuclease-PF09494 (Rhodosporidium toruloides IFO0880)
MRSDSESVISDSEPECAIVRVAAKKEDVKLSGRRRTLDERPGLSTGEAEGREVAKDRVVV
LSSASEGEEPAKKKGKSGYLSSTAGKRRRIPSPTAALDQWTAAVMPIASTSRGTGSRSSR
STSAEQPVASAPFVSALDLLRSSTPQLSDSEDDLKPLDVEVRRNSYKEKGKAKATASSRP
LPTVKKSRSASVSSVEILDAAPSKPRTARKSKMVGVASTDEDARSIRSSSTSDSLPPPDS
WKERFGFGSKATTKSDRSSVQPTSQPQRKKPWEELEAKPPKPKRKTAKKAAKPVAPKKEE
EEVDELDSDPDGLVISSFKLTSVTSSFAPTRPVVRRVTASSLSFLPAPMELPPDERLRAL
TACVVCKAAWPASKALASRQTHTRTCSTANDYSAETVRYLVDSQILRLAEEADGKCRADD
EAKTLFDMAVGKGEGSNAFKEVKVVGVEGYAGDDPKEWYRAIKETQDEFDQARRKAAVAK
VVKLAKEVKKERAEAATSGLDDGWKVVDDSAKVEKEEEEELMPLPTGRLKPDSSTARNAV
ASRADEMLATGVSAVDAFGDVDAVIGDEPPRPTQSFEPSRLTSRYDMPADPIDAFMSLDE
HPHRTTISGTPPRRRSRSPFRPLSLPDPFSDSDDGEGHHGGRRSAGGKQSLWSVAAGRND
ELLGRVVCYAPPVRLPSYHPPVSPAFSPASSARFSTLTLSSSSPSPLRRPALSAPPAPSH
SSRSLHSLPSSPGRKRTDEAAEAMRTLGLSSPSSAGKRRKRKSVTSEDELFAGGVSDVGS
DVMLFGGVGDGGPAAEVSSSEEEPLAKVVAATPKTARRHELPTSAAPSDKPRARRVAPPS
SSSDEEALEPTTPTKRHRPSPSATETAAPLPVKTAAAADMPDYDKMTVATLQREVAKYGF
RKAKEKAVLVRQMQEIWKATHADAVGGAVPAGETDAASPKKLKVNGQGKKVVSTASSPAK
TATKGRRRKKVDIDGDEVLDPNATDEEGVPLAEKVRQLIMADEQLYLRILRYEPVHLSEF
IRLAADNGVKIARAALMRLLDEQSITHYWQDPTGGPRRRYK