Protein Info for mRNA_6165 in Rhodosporidium toruloides IFO0880

Name: 14533
Annotation: HMMPfam-WD domain, G-beta repeat-PF00400,HMMPfam-F-box-like-PF12937,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF50978,SUPERFAMILY--SSF81383

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1217 PF00646: F-box" amino acids 67 to 107 (41 residues), 26.7 bits, see alignment (E = 4e-10) PF12937: F-box-like" amino acids 70 to 111 (42 residues), 34.2 bits, see alignment (E = 1.9e-12)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1217 amino acids)

>mRNA_6165 HMMPfam-WD domain, G-beta repeat-PF00400,HMMPfam-F-box-like-PF12937,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF50978,SUPERFAMILY--SSF81383 (Rhodosporidium toruloides IFO0880)
MPKRSRPSGPHDTPTSSSARGGARGQNTETRALQGGTGSRKLKFKDAQRPPKRTRTAVLP
LLSLEGSLSEEILLRCLSFLGAQDLAVVARVSSAWYRLSQDPQLWRDLYLRTYASAATRR
QALYGGGIERNRPWRELYKVSTNWRSGTARASTLGKSIRKAVLPEAPPVDLAELSSDGGE
PVAGPSVRRPAHLPPIRLSSSRQDVDTILQFHQHYILSASRLPAGNPSTAPPSVTVHQTL
PSGGSAVVGSFSSTRLADFFADRPGFRPPLAITDVRLDEAHGRSDPILCAVFYSTGQWSL
FRLAFPGSTTPSRPFEAEEIYASLAIASPPSHPLSAAPAPSPTSSPFDPVSLARLHSPLL
VTLSDSLTLRFMRLDEAEDGKIEVDEAETPLQSREDWAPVVLDVSQESSDPEEDGVWLGK
KREEQQFKVSLAYSMSVFPASWTVGIQEFTIDVPPSRRAALSTVRVLPKMRISARHATAA
PIHSPLPSTPRRSAPLAPPSPPSTPTPPPTSRSPVTSIEHSHPFIVTSRVDNTLDVYEIV
SRPTPSLTSTLTSATHSRPSTSRIRLNLHPSSATDPLSPLSPPLRIIHRRTLFGHTARVA
SVALLPEPGAGEADEAGVKCVSAGDDGVVKVWHLSPSKAKGKEGRKRRKREGEEVVDVRA
VSTADQRQEDERTDWQRLRQKRGREEERPQKVKRVRVDEDKIVVVGAGADSSSTASSDPA
SPASSSHSEGSNSRKQVCFHPLALCISTAPDGEIEKAMAQAAKEELAQRRRMLGIKTYCI
EAPALSDMTSSAWHSVVNGFTSSLGPYLTSPSSSRARDDSPDRQTGRRGSGSISPSTTRA
RQEDDPTFIPNPPTRLTVKLPALKRSCSSSCATSACKSILRKKPERGCSLPPIDDEPEAS
TSSQRLPHFPPLSPTTSPAPTLARSAPLAIPDRPNRRRSSSLPATVSPDATLIPLLPCCA
TCERATLYGCSPPSSSLDSYTEQWSAGALKKREDEKRAEEEREKYRAEADRIRKSYVVGS
RCGTRRVGFEREWREKEEEWATNHLGELVERQGGVDELDRVKKREGRERRASHEEKDEKG
GTADEEHEEEERSGGQRTAGSLSRATTIVAEPAKYHDDKVEVKMTTTASPTSPLPTPQQP
PSPSNASSAAQLSQPTPPPAAASPSTTTAAPTPASPRPPPVRRLSSAAASFSQRLASAVG
SGLTHVPVSAPGVRTGF