Protein Info for mRNA_6167 in Rhodosporidium toruloides IFO0880

Name: 14535
Annotation: K11672 ACTR5, ARP5, INO80M actin-related protein 5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 745 PF00022: Actin" amino acids 46 to 239 (194 residues), 100.1 bits, see alignment E=5.7e-33 amino acids 613 to 737 (125 residues), 70.9 bits, see alignment E=4.3e-24

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (745 amino acids)

>mRNA_6167 K11672 ACTR5, ARP5, INO80M actin-related protein 5 (Rhodosporidium toruloides IFO0880)
MQSSPKVLSPGQPARPHRTVCPVPELQPVLPGPPTSTDYASFASPSNVLCIDNGATTLRA
GWGAERDPRIVVENVASKYRDRKFNQPVVLAGGEVYVDATSRAHVRTPFEGDTVCNFDVM
ENMLDYVMLKLGVDTETLQNPVAMTETLCNPAYSRSLMTELLFESYSAPAISYGVDSLLS
LYAKSPNPPTADALVISSSTASTHVIPVLGGRGILTSAKKLNWGGAQSAEYLLKLMQLKY
PAFPGRLTSYQSSIIYREHCYHALPSYASVLADLAASPHNLVAQDRIIQFPFIPTTANEQ
TEEDLERQKRKREEATQRLRETAAKQRQEKLERQQEEMIAFTELRDARATSSKPDYERRL
KDAGFSSTSDLEEYLKKLDKSLTRARNKELGIEEQENKEAPSFPLIDVPDHQLNEEDLKE
KRRQKLMKAGYDARIRLKAEKEEERRRVEEERRRDEELRTNDFPRWLEGLRKQHEDILEK
IKERRKLKEQLADRKSLAAQNRMKSIAGLAADEKAGKKRKRNDQDDGFGRSDADWAIYRE
IGTGDDSEDEEDEQEALKTVEARLLEHDPNFTLDDTAQRQAMRKSQLINAFVHGLAPDDP
LDTYDPENVEHTSQLHVNVERVRVPEVIWQPHMAGLDQAGLTEVVEHVLKGFSESERRRL
TQNIFVTGGNTLVPNFDARLRLSLQPSLPVGHPLNIVRPYDVHLDAWRGLSKWSASSLGR
KAFVSRAEYDEKGANWFKGHGWGNI