Protein Info for mRNA_6171 in Rhodosporidium toruloides IFO0880

Name: 14539
Annotation: SUPERFAMILY--SSF52047

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 851 transmembrane" amino acids 510 to 528 (19 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (851 amino acids)

>mRNA_6171 SUPERFAMILY--SSF52047 (Rhodosporidium toruloides IFO0880)
MPPLSPSLETLPQPVQQRIVALALQDDPSFTLIALTALGRSLHAATRSVLARSLTLDDDD
GVLVAAEEWAEQRREGRGPSQDDGGQVQASGAGAVKGSVLAQVVAKDDWADEVRELVVVR
PAVDLSTLPPASSAHQFEQFSFDEDSPASSPGEAESPIPPLNDAALFGLIRRCKNLTSFT
WSSYRLPPDDLCQVLGESAKGLLHFKVEIVASPLAGGAGAGEEAGVAAGSFVGSPSSPQL
GTSPTASFASHGASSTSHTPPRWDATSLSSLPSTLTSLSISSLSLAGSRTLSTSLAFFPS
LESLSLSRTLFVDDAVLSSIGENCKALKRLEVKDMGGTKVGENGLGEVFAGCEALEVLVL
DAVEGRFSRSTWSNLAPLPSSLHTLKLLYPESGPHKSWVLDHLSSLSSILTPTGGPGLKR
LTVSRKVRPEAVVPGSHHLASNPIDPVLDPSKWVLTASSSEIEAICEDGKRWESLELDLW
AMDGGAVKRVLEECAGVRKVKVLLDAPFRNLLTLGSSFAASFALQWFVVSIPPHHTPELS
SLDPNEYLSLVGATPSPSTSPTKSPSGEKGDKEDRSTHPVSHLATLTPPTREWRRFLKRS
HTLESLTWAGRGGLGTWKFGSKAGSSLLRVEFEPTRPSTGATAGTGAVEVPKSPRSPMGR
RRFSILSFGTTPSPTSAVSTLSLSPPSPTQTAQTSPQTSPYTSFGSASREVCSPSTGSAR
RRSSTSSTASSAFFTTPSHTTGSGSALGLYPIPSPPSTAVGSPSKKSFADALSGSNGTSG
GWTMSAGGGVTAAPGWAENGNGTSSRSVPPVEEEQGAEAKGKTSGGGRRRRGSPTTGRKK
AGGATNGGSRK