Protein Info for mRNA_6186 in Rhodosporidium toruloides IFO0880

Name: 14554
Annotation: K01613 psd, PISD phosphatidylserine decarboxylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 565 transmembrane" amino acids 147 to 165 (19 residues), see Phobius details PF02666: PS_Dcarbxylase" amino acids 247 to 304 (58 residues), 51.4 bits, see alignment 5.3e-18 amino acids 326 to 561 (236 residues), 176.1 bits, see alignment E=3.3e-56 TIGR00163: phosphatidylserine decarboxylase" amino acids 325 to 562 (238 residues), 187.5 bits, see alignment E=1.1e-59

Best Hits

Predicted SEED Role

"Phosphatidylserine decarboxylase (EC 4.1.1.65)" in subsystem Glycerolipid and Glycerophospholipid Metabolism in Bacteria (EC 4.1.1.65)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 4.1.1.65

Use Curated BLAST to search for 4.1.1.65

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (565 amino acids)

>mRNA_6186 K01613 psd, PISD phosphatidylserine decarboxylase (Rhodosporidium toruloides IFO0880)
MPTAPRMPRWVPALRNRRAVPARQMHSSAVPPSQPPSSSSPLAPRFRKRDIILRGPQLLM
RGPGLLLRAPKVVWRAPAVARAGTRRLLSSTRMRSREQRPVSEGIEQPEQPVAGPSKGAE
QGPQGNGPRESFASRLRKRWQSTPTKWSPIPVSLGAAVLVVITLYKQASEKGKEPLPDGA
VKVQGPWQVHVIGALPLRSISRLYGLVNSYELPVWFRVPGYKFYSWVFGVNLDECEPSDL
REYRSMSEFFMRRLKPGVRPIADAPLVSPADGRVINFGVIEGGQIASIKGATYSLQALLQ
GAGEAGTVEGPHGLPEHPHNAEAISLDEKEFANVNGISYSLGDLVGDTGDRFRDAKNVKD
ASMSNDEQNRQRDGPKRSLSGDVAVATVIAKAAFEPRDGNKLFFSVIYLAPGDYHRYHSP
TSWVVERRRHFAGELFSVSPWMVGKLADLFVLNERVALLGRWRYGFFSMTPVGATNVGSI
RVNFDKSLRTNSPLRPVTPGTFSEATYANASELLGGQPLRAGDEVGGFWLGSTIVLVFEA
PPSFQFEISNGQKLKVGEAIGRIRQ