Protein Info for mRNA_6204 in Rhodosporidium toruloides IFO0880

Name: 14572
Annotation: KOG1618 Predicted phosphatase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details TIGR01460: HAD hydrolase, family IIA" amino acids 51 to 362 (312 residues), 138.3 bits, see alignment E=3.7e-44 TIGR01456: HAD hydrolase, TIGR01456 family" amino acids 51 to 388 (338 residues), 217.3 bits, see alignment E=2.4e-68 PF13344: Hydrolase_6" amino acids 51 to 158 (108 residues), 79.3 bits, see alignment E=2.1e-26 PF13242: Hydrolase_like" amino acids 292 to 385 (94 residues), 80.3 bits, see alignment E=9.2e-27

Best Hits

KEGG orthology group: None (inferred from 47% identity to uma:UM04682.1)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (417 amino acids)

>mRNA_6204 KOG1618 Predicted phosphatase (Rhodosporidium toruloides IFO0880)
MLRTAVTSALPRSAAASAFSGGGRVLSISTAPQTTRLARRSISTAPKGPYFCFDIDGVLK
QGSHVLPQAKAVLQVLSGNNPLKRRYPFLCVTNGGGSLESERCKKLTKELEVEIGEHQIV
QSHTVFRSIVPQYADKPVLVVGGIEDRCRRVAEAYGFKHAYIPADVLAWKPAVWPYHKLT
EHEWTYVRHADFSSISFAAILVFHDSRDWGRDVQLVLDLVRAKDGVFGTSKNPKDASQWT
PERQTPVHFSNPDLLWGNEFSQPRFGQGALQESMAAVYKLTTGHELQRTTGGKPTNATYT
YASHLLSSQISHLTSGTPINLHPTSSSAPSLPGNVYMVGDNPASDIAGANAFGWESILVK
TGVFRGEKREDAEHVPTVVAEDVWEGVKWALEREGEGEAVSRMPEEHETIAKDGPRE