Protein Info for mRNA_6214 in Rhodosporidium toruloides IFO0880

Name: 14582
Annotation: K11684 BDF1 bromodomain-containing factor 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1089 PF00439: Bromodomain" amino acids 461 to 507 (47 residues), 31.5 bits, see alignment (E = 1.5e-11) amino acids 548 to 580 (33 residues), 24.5 bits, see alignment (E = 2.3e-09) amino acids 659 to 740 (82 residues), 68.4 bits, see alignment 4.5e-23 PF17035: BET" amino acids 928 to 989 (62 residues), 63.9 bits, see alignment 1.3e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1089 amino acids)

>mRNA_6214 K11684 BDF1 bromodomain-containing factor 1 (Rhodosporidium toruloides IFO0880)
MSHEHSSSIDNPHQRHPVTVAAKEHLPPPPLPHSLPTPPNTDTPAAAATTSMEQQQNGHS
HADTPAPAPAPAPPPRLARLARHSASSVAAQPPTPMPQPAPPAQPAPVENGESFVNGAPP
AHEHSHEHGTFNEQAEEAVEHAHAHPGLGSIQHEWEQRLTAASAADGTETPPAGVDVLAD
VAMGEAVLGLAEFAAGAGSGDVKEGSPGVSVQAADDGPANPVPPTQGGTLKRSSPDGDDA
TGDAAGLLGFAQGEVVQGGGDEREAKRVKVEPEPTPAPAVPSPSPYSASSAAPPPPATPS
IVEPSAASTSAPSAAPDSSVPAPAASPAPIPVQGYDPSAFTSAPTLASSASPYPPAPASA
PPMPTMSPSDLHTFAGGPVPGPSSASLPPPSAASPSVSISSPNPAMFAASPDAFQQQPQQ
PIASTSAAPAPAEADANASPAPPPPEPIAIMTKEQQKHAINMVRNLKRNKNAPPFLKPVD
AVALHIPDYYKIILEPMDLGTIEARLQATSKAMQGANKAGRMYGLDYSEGRDSAARWEGQ
VPEGEEPHTYRTVAEFKYDLDLVWNNCFRYNGPRDKNPVSAMAGNLMDAAEKAYRAMPFA
PAVSREIHAPAKDLPYLESAGVDITAGGIYNLAGIPGHAPPPKKAKSAQKIAQEQLRFCK
EVVKELFKKTHESYAFPFYQPVDLNVYPQYTQYVQTPMDLSTIRSKLEHNQYPLPPYQAF
EHDVRLIFANCYAFNPAGTAVNDWGHRLEAVFETKWAERPMAYEDDSEDEDESFSFMEQQ
LIVMQQNLELMRQNKKAQKEAKRLQHMQAQVRMPHVVAPLPPPPAPKPKKPSQQQQMYSA
YANSPYGAPQAVPRPKKPSGARTSSGGMGGMGGGGQRKPKRPKHDDDSDDYYEDDGGAYY
GGGGSSSSRRRSTHHAAHAEPMMEEYVDFDMKRELAVKIVAFEGDQLEEAINIIRRGRPD
LLGAANQEIELDIDQLDQATLLNLYRYVCPGSQPATRPIQAPQRAGSSKPAKGGNRNARK
NLDEDLESQRIEALEAQLRQFDQPAESSDAGAVPQEGGGDGGGGAAHGEGDQASSDSSDD
DSDSDSDME