Protein Info for mRNA_6217 in Rhodosporidium toruloides IFO0880

Name: 14585
Annotation: K17362 ACOT13 acyl-coenzyme A thioesterase 13

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 124 transmembrane" amino acids 18 to 31 (14 residues), see Phobius details TIGR00369: uncharacterized domain 1" amino acids 1 to 94 (94 residues), 43.5 bits, see alignment E=1.5e-15 PF03061: 4HBT" amino acids 14 to 85 (72 residues), 53.6 bits, see alignment E=1.2e-18

Best Hits

KEGG orthology group: None (inferred from 53% identity to cci:CC1G_11708)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (124 amino acids)

>mRNA_6217 K17362 ACOT13 acyl-coenzyme A thioesterase 13 (Rhodosporidium toruloides IFO0880)
MEVKRHQINRLNGLHGGLIASLVDTMGSLALASKGLYMTGVSTDMSQTFVRGAKLGETVR
IQSELVNMGKTLAFTRIELYSAESGKLLAFGSHTKYIADALKSEKNVKFSEDGEQLVQGE
MPSE