Protein Info for mRNA_6233 in Rhodosporidium toruloides IFO0880

Name: 14601
Annotation: K16945 CDC11 cell division control protein 11

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 PF00735: Septin" amino acids 14 to 290 (277 residues), 369.5 bits, see alignment E=1.1e-114 PF01926: MMR_HSR1" amino acids 20 to 136 (117 residues), 23.7 bits, see alignment E=4.3e-09

Best Hits

KEGG orthology group: None (inferred from 74% identity to lbc:LACBIDRAFT_300853)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (407 amino acids)

>mRNA_6233 K16945 CDC11 cell division control protein 11 (Rhodosporidium toruloides IFO0880)
MAGPSSFAARRKVKGVQLTIMVVGQSGTGRTTFVNTLCEQPLIEHQQPVAPEEAHLESGI
RINPVQVELEEDGVRVSLTVVDTPGFGDQIDNEFTFNEIMGYLERQYDDILAEESRIKRN
PRFRDNRVHALLYFITPTGHALRELDIELMRRLAPRVNVIPVIGKADSLTPSELHDFKRR
VMEDIEYYSIPIYNFPYDAEEDDEDTIQENSELRALMPFAIVGSEEEVEVNGQPVRARRY
PWGIVEVDNPQHSDFQRLRTALLQTHLHDVKEITHDFLYETFRSEKLSRSLVGDSMGGGY
GAGQDASVNPEDLATQSVRIKEEQLKREEDKLRELELRTQRELAERRQELLAKEELLRSL
EARLADAQHSNSSTPLPPSQPQSPIPQQGQPHPVLTPHGGAPTNGLQ