Protein Info for mRNA_6237 in Rhodosporidium toruloides IFO0880

Name: 14605
Annotation: K20061 ALY1_2, ART3_6 arrestin-related trafficking adapter 3/6

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1060 PF00339: Arrestin_N" amino acids 658 to 709 (52 residues), 30.1 bits, see alignment 4.9e-11 PF02752: Arrestin_C" amino acids 739 to 899 (161 residues), 59.6 bits, see alignment E=4.8e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1060 amino acids)

>mRNA_6237 K20061 ALY1_2, ART3_6 arrestin-related trafficking adapter 3/6 (Rhodosporidium toruloides IFO0880)
MSSASLRLTEPVVFLVGGLDYERARQRQRRATARAANAAAGNGTETAATSPAESRNHSPA
RLFSNSRAASLSRPGSRAASPAPPLSRAAIPQGDDFIPPNSRGRSSSRTRRVDPPPPTGP
AEPRPGEGISRGRSGSLVREMTEAQIRLREQQEHEALDEPPPAMLRGLLTVHLSKPTRVK
EISVRFKGVARTDWPEGIGPRRLDVMEENVLINVTNTFFSAASSSMNRRAASIGPGSGDH
GDEPRGRSSRRAASVVPGRELSHGRSYPPNSLFHQQPSPVTSTISVGEVSRAPNLSRIAS
EESVNGMVPPIQPGEAAPAYEVAVESQPGSPLHLPHALNLSVDTLDLGSPAQLAFRNSSR
QFDRSPTPSRSPLATANPIISPSTSNHDLRLNRTSTGASRLSHESGSSLSTHSTHSDDTD
RPHLDRHASSGASTAASQSSDSEITGTGWNSAPVPGTAASSIHRGRPSTRSRNLMAGLEQ
LGEDEAGSLDVVANGVSGMTFQPKSSTRQPPAPSASSERGRRASTSSNATARRVSSSDRP
TALPSALKSTGSSSSSARSASRGARFSLSGITDVFRHKSSSRARDMQRDESVASTTRRDA
SPDTQRGGSRMRSQSRGRKTALKALRDALVAGHHHHHNAERDGSDDEGHKDSDVLAVGDG
WKEFRAGTYTYPISIPVPASLPPTLDCEFGHVHYTLKATVHRAGALTTNLTSSTDVTLVT
TLGEEDTEESESIVVERFWETQVKYHVALSGKSFPIGGQIPVSIRLNPLAKIKLYRITAQ
LEQKTSYFASVTSGRKLTRHETPKRFQLLRIENKDPKEPLLPILSDDPNVLANHPLKDFF
INASSSSDETPSLLDPVGPWHLDGTLQLPDCSTKLNVSTNHEKSNISISHTLKIMLRVER
GDDEYLDSKGNRKLWDIVVEAGAVMLSCHLSQNVLPAYTDATSSLSGSTRPRRNTITART
PTHTCGADHGNRHHGLHINVGGSSSTGRSHSSGPPVASLEQNLLFARLISGETTPAGETP
PTYEAVVDGTAPEGHAPNEGRAEVVATEEEERGRSSSRRD