Protein Info for mRNA_6260 in Rhodosporidium toruloides IFO0880

Name: 14628
Annotation: HMMPfam-Meiosis protein SPO22/ZIP4 like-PF08631

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 970 PF08631: SPO22" amino acids 228 to 476 (249 residues), 72.2 bits, see alignment E=2.7e-24

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (970 amino acids)

>mRNA_6260 HMMPfam-Meiosis protein SPO22/ZIP4 like-PF08631 (Rhodosporidium toruloides IFO0880)
MHATARKRQKLDRTAPSDGNLVEALSRLRAQAAFFAAPGTDAGELQREVSTLNQRIAAFE
DALAQAEAGEVDRLIGRGWKDELDGTGTRLWNQSTALKLAQDDGQEQRAKLGVVASLRHA
GYRLIRLGALEPLTTEARLSHLSLATKTASAFLDASQTSKADKLLVDAASLAADLDDEPA
QDPTFLSERAKALLAHYCCRIRSANASGVDTIACWVREKARDLVHQGNLPRRETDKFARV
AYEVGAAAINGEKGAAGQDSSSAIDWLQCALAILERDGQDEASRALQLATLKTLAQAYLI
ATPSPEHWEKAEETIKQALDLEPSASLARRLVKLVIARNGSDAEITQAFLAAVKVVSQNQ
EEIRRLVATLEALPTTKRPLRFQLLADAVEMLSSYTSNAVANSMLISQILLASFVQAQDA
DKRYLVKMLETLDKNMPAFRLDSNDAFTCMTYVWRHGDKAAQDRRSADAIDWFLLVQHAA
FGSLETNVKAKVLRRASDSKAVVEMLTEKSSARAQKILQDPVLLEDVAKNHSLRFRAFLD
EPSKALACLQAMTQSSDFSPKLLMWAHKIASEQGKQDLAAKILSMVGQVCSEGAVADGTD
IDLMTLTRAIARKHIDALAKKSPDDQEATVHALVKQLEAGYDLARSLSAQNDSASLRKDL
AWFYKTAFNHCVEHGAGWSSELATAVFAITAKLIEFDLELAKTSDPALEGKLVACRLATF
RQRVVSARKAKGAKKNEEYRLLLAEVDKLIKQLERSPGSQPEKANDLLAAAYALKVEAHA
ELGEWSSLVSLVDAAESSSSRLPVSVVKLVVDKAASTTSTCPADSMSKILRKTLAILYSR
REVEIAEMALWLRLIVSVLIHRNDRDQALAYVENAAHFIAQHQDDFPEDEANWMLATAWD
EGLDLFASASPVAGEKWCSVGLKIARTLEGVGEGEEVESGLAKQMETNLAELKSRYGGSE
VGGDGDVEMA