Protein Info for mRNA_6267 in Rhodosporidium toruloides IFO0880

Name: 14635
Annotation: KOG1721 FOG Zn-finger

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1241 PF00172: Zn_clus" amino acids 120 to 154 (35 residues), 27.2 bits, see alignment (E = 3.4e-10) PF04082: Fungal_trans" amino acids 596 to 794 (199 residues), 51.6 bits, see alignment E=7.1e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1241 amino acids)

>mRNA_6267 KOG1721 FOG Zn-finger (Rhodosporidium toruloides IFO0880)
MQDNPDPARPFLCVECGSRYTRQEHLDRHVTAKHRVAKDFVCPTCGKGFARKDILKRHEQ
GHAKQQAAAAEAAAKGDYYDKGYDSPASNAAKGKKKRVSSIGDAGADDGSGPVKIARVGR
ACCRCSKSKLRCDGQHPCERCRKAGVDCSFERPPKSGSRSGSVSMQIDDGFGLTPSMESD
GDTTSPENTFGLALPTPPPPETWSRQAGSAASALSGMSPYHMPLRGPPQHPALPPTSFSF
GPPPVNYYSGRPPDAFNYRPAPYHNAAAFPSLQLPHHGPSPLNPFASTTLPPPPAPASAS
SQWDNSAYGRQIGDVGSSGAGQLDFLDLISAGAGDQEIDWSILNTGFASQDPVINANSGP
VPTGFTPRDGMSPGTGDIEGDIEVGSLLPPSLGGNASQPMSDLRNGGIPEEPSPASAAAL
VLAAAANGDDRSMNIKSEKDTSPERPAYGFRNNSLVESDNAAVSLLQLATHTPRVSPEPG
ASLQKTVLNSATRGGVEDPLRTSHPSHTPSDPWPLSYRPTEPIEDILPTSARGTGYGSRA
ASPPPHHPHRSLAHVPSVTESTRLRILYKVRELSASDPSLSERFVPRLELLELFTQLYFD
KYHALFPIVHKPTWDPNTAPSFLTLAIASVGARYAWERVVGASMHAHALLECARRLAQIM
GDLDNTLLRTVAWQQTILIVLQSGMMSGNKRDLERTQAFASMPITFARRQGWLKEPQVDE
QAEELFPLDERWRRWRDREEIRRLGFGAVTFDCSGTALWNMDTASLYLDAANTPLPCHDA
LWDAPSSAAWSSLFRHSILPPASPTLSHAVHLACSFASLSGSASTTLSSISRDAFALSTV
LSVLHSLGWERVHARAVEKTFLTPGSGADAGGKAGDGLKKEDGEERIDEVDAAQAALEAG
IEFFQDRILLPPDLLARLDDPGAASGTMALMVHLTALTQRLPIRVLQPFARSATAPAQPA
TLAALRSWALAGHGSVARTTAYHAGQLIALCRPALSASVGGSSSNSSEGPLEPFALFYAA
LALVAFVREGGGGPPPSTEEAAPTATKASGSKSPSEGHELVLDTLRDRSDSVLAAWVHSG
PLGSRQVPAAAVPSLRLLGGTGHTDASSSSTTGRLDSSRAAERILSCAAKRLQALKVWKV
GDLLGSVLEQLAAVERLRLDEQERGDALGLALGALKEDQDIAAAAAAAALQHGDQLKALG
GGSGGGTGAASSSVAASTPAGGDDDEDDELDDDDDDEEQNA