Protein Info for mRNA_6272 in Rhodosporidium toruloides IFO0880

Name: 14640
Annotation: KOG4679 Uncharacterized protein PSP1 (suppressor of DNA polymerase alpha mutations in yeast)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 267 PF04468: PSP1" amino acids 131 to 214 (84 residues), 104 bits, see alignment E=2.1e-34

Best Hits

Predicted SEED Role

"Signal peptidase-like protein" in subsystem Heat shock dnaK gene cluster extended

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (267 amino acids)

>mRNA_6272 KOG4679 Uncharacterized protein PSP1 (suppressor of DNA polymerase alpha mutations in yeast) (Rhodosporidium toruloides IFO0880)
LGRGVPLHAIPPDAPLCIVGFKAGRKDLFFCEDPNLHLEEGDLVIVEADRGRDVGKYLKS
CTVDEVHKFQQHLVELALGQLANPAAQGAQGGMMGGLQGMGGMGGGAQGGGAGGAAGPAQ
LARMTKECQPKRIYGKAGPADTHALLAKAQDEVKALALVRSKVAQKGLPMEILDAEWQWD
RRKLTFYYTADQRVDFRELVRELFRIWKTRVWLCVAIACFVEAARADLLSSIPQLLSRPA
TTLVRPRLSARLTSRSIPASVRFHSPL