Protein Info for mRNA_6280 in Rhodosporidium toruloides IFO0880

Name: 14648
Annotation: K14050 RABGGTA geranylgeranyl transferase type-2 subunit alpha

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 PF01239: PPTA" amino acids 63 to 88 (26 residues), 29 bits, see alignment (E = 3.4e-11) amino acids 98 to 124 (27 residues), 27.9 bits, see alignment (E = 7.5e-11) amino acids 149 to 174 (26 residues), 34 bits, see alignment (E = 9.2e-13) amino acids 197 to 222 (26 residues), 31.9 bits, see alignment (E = 4.1e-12)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (313 amino acids)

>mRNA_6280 K14050 RABGGTA geranylgeranyl transferase type-2 subunit alpha (Rhodosporidium toruloides IFO0880)
MQTVQQKAASKEYTQEALDLTTRLLSLNPEFQTGWGIRRRILLSGLLKDADAETRQRILE
GDLHLTMASLQQNPKVYCVWEHRKWVLETMTDADWGWEIKMVEMYLEKDARNFHSWDYRR
YLISSILALPSDPSPSRSKPLPRPTTESELAFTTRKISANFSNFSAWHYRTKLLAKLWDE
KGWRPDAKERLERVDQEFELVKQAIWSDPNDQSAWLYHRWLVGEGTIPIVRREIEGIDEL
LEEEPDSRWCLDSLVYYKRLLVRLLEAQGDATRHEREELNLACVEMLDKLKEVDPMRRAR
YQDLSLQILPARR