Protein Info for mRNA_6290 in Rhodosporidium toruloides IFO0880

Name: 14658
Annotation: KOG0394 Ras-related GTPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 447 PF00071: Ras" amino acids 23 to 165 (143 residues), 101.6 bits, see alignment E=3.5e-33 PF08477: Roc" amino acids 23 to 133 (111 residues), 94.6 bits, see alignment E=5.2e-31

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (447 amino acids)

>mRNA_6290 KOG0394 Ras-related GTPase (Rhodosporidium toruloides IFO0880)
MSHTPLSAPAPSGPPQPPPLVLKAILIGDASTGKTCLRQRFVNGGFSLAYRATIGCDFLS
RKWRVERDEDGREEVSLQVWDTAGQERFRSLAPAFYRNSDCCILVYSLTSPLPPSQVASS
IRTWFLEFAAKCPVSEDEDERRKFCWVCVGTKADELAERGAEGEKQAKEIQDAVDKVLDE
LMPRGRKGARRRSEAGKTLLPKVSVEVLPPPGKGGKLKKRRLPRVQVGDKQTELAPSASS
ALGDPNGTAAVKISASSTTSTDSPSATVSTASTASTPPAFELDEPIPDLLVATSPPSAPL
HFGRAGAPPAIYEGGPYKDPDGHIMERDDLEDDSMRPDHRNGEAGEEVVQDEPVEEEEED
EVAAFMSDGIKHFRRTSAKTGEGVEEIFDYIARRVTAIRAFDSLSEDEHAGTPYKRGRKA
DPPKDVIKVNERETLSVGQKLKSACCS