Protein Info for mRNA_6297 in Rhodosporidium toruloides IFO0880

Name: 14665
Annotation: K17970 MDV1, FIS2 mitochondrial division protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 818 PF00400: WD40" amino acids 392 to 426 (35 residues), 24.7 bits, see alignment (E = 5e-09) amino acids 539 to 574 (36 residues), 29.5 bits, see alignment (E = 1.5e-10) amino acids 703 to 736 (34 residues), 29.4 bits, see alignment (E = 1.7e-10) PF11715: Nup160" amino acids 532 to 590 (59 residues), 19.8 bits, see alignment 4.3e-08

Best Hits

Predicted SEED Role

"High-affnity carbon uptake protein Hat/HatR" in subsystem CO2 uptake, carboxysome or Carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (818 amino acids)

>mRNA_6297 K17970 MDV1, FIS2 mitochondrial division protein 1 (Rhodosporidium toruloides IFO0880)
MHKSTGSGDGFFAGIKETFIPGSTSSSQPAQHSSSANGSGSYLPNPSNLLVDLAPHLVGS
SSRLLHPSNISSHQASLTSSHPPSTTTSLRRKISFIRAGLSIGRPNAPLQSWSELGTQLY
LRDRVDELLRLPVPPAPFNLSSASTSAASAQQGQLTLEAPPPRPEDPVPLFQGFRATIPA
AQASKTERRRRRALLSERALGLEGGKLGLKERGDKARGMLGGVGEFGEVEQDNSLTIGRR
SKGRRKTRGPVDDEIADADLQSREDLEKDAKEVEGDMANIAVRRALLNGQIKDVEAKIAA
LEKVREDLRKGLLGLREEELELEDELEGIETRLARLPLNASLPSVPPTAANGRARPEPAV
APLLPTSSSRRRKGPAFLPSEHDELPTNVAFMTLSGHLSPILALDFTEPYGTLVSSSSDS
SVRLWDLTTGTETGFLKGHDGLVKALQVEGSVCVTGGEEGGIRVWDLDKAEEMFYSGTLP
TASLARSMMAEEDVFGPTATVGAGGLVNGVPAEDDGVLRESSSVRDGVEASTGQEQNGPC
VRHLQGHTKAVTSLFFDGSTLVTGSSDSTLRQWDLTTGQCVQTMDILWAISNPLPSSSIS
YPASSYSHSNTDPFASAFAQPAATLGSPPVTPRKQYAASLRRQSSLFESPGAMAAPTTAT
YADGSWELYDDFVGGVMFWGYALASGTRDGCVRLWDMRTGQAHRTLVGHTGPVTCLQFDE
YHLVSGSLDRTIRIWDLRTGAISDTLRYDHAVTSLQFDSRKVVAAAGENGVKVYNRTTME
HSSLMLGGHTAPAEKLRFMDKYLASGGRDATVKIWALQ