Protein Info for mRNA_6302 in Rhodosporidium toruloides IFO0880

Name: 14670
Annotation: K12562 AMPH amphiphysin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 416 transmembrane" amino acids 204 to 226 (23 residues), see Phobius details PF03114: BAR" amino acids 6 to 236 (231 residues), 131.5 bits, see alignment E=8.5e-42 PF07653: SH3_2" amino acids 363 to 413 (51 residues), 30.4 bits, see alignment 4.9e-11 PF00018: SH3_1" amino acids 364 to 411 (48 residues), 55.9 bits, see alignment 5.1e-19 PF14604: SH3_9" amino acids 365 to 415 (51 residues), 46.3 bits, see alignment 6.1e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (416 amino acids)

>mRNA_6302 K12562 AMPH amphiphysin (Rhodosporidium toruloides IFO0880)
MKGIGKAFARAPHMIGSKVGMGKQSVDAETNELVRKFSGLEEYTAKLVKDSSSFRDSVAS
MLTSGAGFATAFSTLFNPLVDEGSLTARHPEAETTLRNIDHYHELMAELRDAIQPELELV
DARVTAPLKEYQELLKKIRKTITKREHKLVDYDRHNNSYNKLKDKKEKSLSDEKNLFKYE
QELEIATQEYEHYNNMLKAEIPHFIALSTSLISPIFQTFYYIEIGILYTLLEKMQAFATS
TYGADALATDGLETMHYERMGDVPERIEALSITKRFTSTAKFMSQHRANSGSETGSLHRA
SSTYSSSSLGRSGTSSSFARPGASDAAPPAYSPPAFSPGLAGKRPPPPPPPGRPGAAAKK
EYVTALYDYTAQAGGDLSFQAGDRIEIVKRTESDQDWWTGRLNGQEGQFPANYTQL