Protein Info for mRNA_6308 in Rhodosporidium toruloides IFO0880

Name: 14676
Annotation: K09326 OTX1 homeobox protein OTX1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 852 PF00046: Homeodomain" amino acids 293 to 349 (57 residues), 54.8 bits, see alignment 3.3e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (852 amino acids)

>mRNA_6308 K09326 OTX1 homeobox protein OTX1 (Rhodosporidium toruloides IFO0880)
MAAALPSTSSSSSHTFPPPPPHHPPSASSSSAPRNSRTILSDTTSQSFGNPNSLPGPPPS
HFFPSVPKAQRDRARQARLDAAAAAGSPSPPPPAVPAKDGITSRAGAGVGAGSSDDERQQ
RLARAELASSGPFDNRRPSVGSGVGAGGSAGTKRRFRDVERTSWDAASELVRIEREREKE
RVMQGVEDAKGKEVMRDEEDREKTPTPSMAQSVSFADRSQPRETASTSVSPEPTSASAKR
FSIASLVSDDANADGDDPMALDDDASVVTGATGASANGEGGQSDGSAKEPAKKRSRTLTT
PAQTAVLNALLAKTRFPSTEVREEVGRQIGMSARRVQVWFQNRRQSQKRQRDREAQEAAA
ASAAAASAMSAGVHPSMHHPGYPPLHPHAYPPGAYGGPIPVYSGMQAGKPLPPHPGAVYP
GRPDLHRNASMDSLGSQQGYVSSRLSMGSSYQMRSAMHSRDSLAPLPSEQRFSNPYAGGA
PPYTFGRPPHPAYGPTGLPVPPPQHAYPPHPGAPAPIPTKLYFPHVPRSHAPPGRIQADP
LASAGAADVKLPSLSSVLGAGPAAPQGAQQPPPPAALPPSSAPVDHQPMFSHSPFSPTPT
HASVTSPVSAPLPNPSFQRAMFSPEPSSSFERLRISTGSLSPTSVTTPTPFSPASTAPTP
STAATTPVAPARPGSTDILDVAMETMAYRSSGRSLPPRQTLPPLRSVFGDAPIATRGGKK
GGPSEADKALLAPIKAESAGAAAAGGPPRLPPIQSFAPVGLPTTSSSGSSSASPPATTSH
PPIRDSRASTWSEASHATRSSAASFEFGKPPAGSYRASTSSERDVLAEERARGESVETEE
TSASAAEVGMAK