Protein Info for mRNA_6309 in Rhodosporidium toruloides IFO0880

Name: 14677
Annotation: BLAST expressed protein [Cryptococcus neoformans var. neofo...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 180 transmembrane" amino acids 20 to 46 (27 residues), see Phobius details amino acids 66 to 89 (24 residues), see Phobius details amino acids 109 to 127 (19 residues), see Phobius details amino acids 142 to 161 (20 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (180 amino acids)

>mRNA_6309 BLAST expressed protein [Cryptococcus neoformans var. neofo... (Rhodosporidium toruloides IFO0880)
MPSSVNSPTPCFDPLPSPYFLFFSVLEPLLTFAGAAYAIFTPLPYYIALYPPSLLAPPTA
KSTHVAAIMVVRQLGSCFFLFALMGCVLLPAMRRTLKDRPAELETLVQAYLTCLAAADLT
HIGFTLFDLGLTGSLAPSGWNALVWGNVGVTSVLFLVRTLWMAEVGRGSARQSGAERKSE