Protein Info for mRNA_6317 in Rhodosporidium toruloides IFO0880

Name: 14685
Annotation: K11649 SMARCC SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 643 PF04433: SWIRM" amino acids 105 to 190 (86 residues), 106.4 bits, see alignment E=1.6e-34 PF00249: Myb_DNA-binding" amino acids 346 to 389 (44 residues), 48.5 bits, see alignment 1.6e-16 PF13921: Myb_DNA-bind_6" amino acids 348 to 390 (43 residues), 26 bits, see alignment 1.8e-09 PF16495: SWIRM-assoc_1" amino acids 513 to 592 (80 residues), 84.8 bits, see alignment E=6.4e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (643 amino acids)

>mRNA_6317 K11649 SMARCC SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C (Rhodosporidium toruloides IFO0880)
MQVDPQQPQQTLKRPAEDDPTAATAAGGDPSASTSTGDNKRARTQEPGEASTPGATMDDG
AEDGDANQRSAKEAGMFGDDAASVSKRLTTARRYLATQTHPVIVPSYATWFSLATIHPIE
RRSLPEFFNSKNRSKTPTIYKDYRDFMIHTYRLNPSEYLTVTACRRNLAGDVCAIMRVHA
FLEQWGLINYQIDADSRPSSLGPPFTGHFRILVDTPRGLAPLHPGTKPSSTSASGTSIRT
DLIKTDPSRPATADIRLSSATASSLADQALAAQTAAEASPADPQRSLKPCHTCGTTTPTV
RYTSLKSKGEVALCGACYSEGRFPSTMHSGDFVRLDADPFAHAETDPWSNQETLLLLEGI
EMHDEDWDKVADHVGTRTKEQCIAKFLKLPIEDEFLAEAGGAANGPYGFGRVPLSKTDNP
VMSVVAFLAGAVDRKVAAKAAGEAIEELEKGLKEKKDKAPPAGGDAMEVDGAVKMNGEAS
SAVEKKEEDADDDPLADSSRTSATSNIQKAALTALGSAAAKAHALALEEDASLHSLVTAV
VEAQVRKLDLKLKHFEELEQLVEAERRAVEVQKQELFEDRVKVARMLEEAARLVTAARQN
GAQVQPAEVQAQMAQMGYAPPRAQPVQNPGPAPAQDGTAVPLA