Protein Info for mRNA_6351 in Rhodosporidium toruloides IFO0880

Name: 14719
Annotation: K02995 RP-S8e, RPS8 small subunit ribosomal protein S8e

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 212 PF01201: Ribosomal_S8e" amino acids 1 to 190 (190 residues), 189.3 bits, see alignment E=1.8e-60 TIGR00307: ribosomal protein eS8" amino acids 1 to 192 (192 residues), 167.4 bits, see alignment E=7.8e-54

Best Hits

Swiss-Prot: 65% identical to RS8B_YEAST: 40S ribosomal protein S8-B (RPS8B) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

KEGG orthology group: K02995, small subunit ribosomal protein S8e (inferred from 77% identity to ppl:POSPLDRAFT_110841)

Predicted SEED Role

"SSU ribosomal protein S8e" in subsystem Ribosome SSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (212 amino acids)

>mRNA_6351 K02995 RP-S8e, RPS8 small subunit ribosomal protein S8e (Rhodosporidium toruloides IFO0880)
MSITRDSRHKRSATGAQRAHYRKKRQFEMGRQPALTKLGAKRIHTVRVRGGNTKHRALRL
ESGNFAWGSEHATRKTRIVGVVYNASNNELVRTNTLVKGCIVQIDAAPFRQWYEAHYGVP
VVKKGRTKEALAAVADEAAKGSNHVKRTLQERQKTSKVDALLESQFAAGRLYAAISSRPG
QSGRADGYILEGKELEFYVRRLRSTKAKHAHA