Protein Info for mRNA_6360 in Rhodosporidium toruloides IFO0880

Name: 14728
Annotation: K17790 TIM22 mitochondrial import inner membrane translocase subunit TIM22

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 190 transmembrane" amino acids 56 to 79 (24 residues), see Phobius details amino acids 162 to 181 (20 residues), see Phobius details PF02466: Tim17" amino acids 56 to 174 (119 residues), 108.4 bits, see alignment E=1.3e-35

Best Hits

Swiss-Prot: 49% identical to TIM22_CRYNJ: Mitochondrial import inner membrane translocase subunit TIM22 (TIM22) from Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565)

KEGG orthology group: None (inferred from 57% identity to cci:CC1G_12091)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (190 amino acids)

>mRNA_6360 K17790 TIM22 mitochondrial import inner membrane translocase subunit TIM22 (Rhodosporidium toruloides IFO0880)
MATQYLTPFVVPGYEPPSPDPETGEVRTKTEDERREIISQMKQIRLVQEGMESPVAKAAI
SGAMGFGIGAFFSLMGSSFTIEDPLQREQYAGMNTRQKAKVIFGDMGKSMWRQGKGFGMV
GALYAGTECVVEGFRAKNDIYNSIYAGLISGAVLARNSGPRAMVLGGMGFAAFSAAIDSY
MRRDTPDEDA