Protein Info for mRNA_6370 in Rhodosporidium toruloides IFO0880

Name: 14738
Annotation: K15692 RNF13, RZF E3 ubiquitin-protein ligase RNF13

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 788 transmembrane" amino acids 35 to 54 (20 residues), see Phobius details amino acids 396 to 420 (25 residues), see Phobius details PF13639: zf-RING_2" amino acids 623 to 668 (46 residues), 41.3 bits, see alignment 1.6e-14 PF17123: zf-RING_11" amino acids 624 to 653 (30 residues), 36.6 bits, see alignment (E = 3e-13)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (788 amino acids)

>mRNA_6370 K15692 RNF13, RZF E3 ubiquitin-protein ligase RNF13 (Rhodosporidium toruloides IFO0880)
MASPHRGSTTRGHVLLPAADSGIARATRLRTNGSVFGMSRTWAVIAVVAVAALFKVPTPA
HAYIPALPVNDTSALDNSDDLLHLASYNGVFNTGISRQLWAEGFDDNGNYTNITTIVPWT
KYSKGVLIHFDEGLRNQSPSAVPWIAMISCDTNGTSPSETDIFTIVRDLGAQAALLYSLH
SEGCQINQEYLNSFEKVLDVFAATSLQGSRIIESQFTNVNMAACQYNSTTLNASYNAIET
LLNSNPLSVRGNVPINSTSSLSADVATSVDVNASSTAPSVFDPNASDSAPGMSSDSAAPT
DSSTSFPSLFSASIASPLMQPRQNTATSTSHATSTHSSATRTSSAAPAATTSNTIENYLG
AVMAAANLTVGGLNSASPTATASSGNGGPNTSTSLAMIILYAITGVVTFLFLIVIMSGAI
RAARHPERYGPRAAGGLHGSGGPGGAGQTRAAGLTRAILDTFPVVRFGGGAATAQTSRGD
EEAGADGSDGQKKSEPGTPEAIELASLPTMVAVPTAVHTLGDGRDVVEEHEEVIADPARA
RSASRASTMGGDSFYSAESTPLQHQTSTTPLNASAGLATIPASPNLLESPPALTSSVPPS
TRPTAAEEAAILASTDLPSSSESCPICLTEFEEGDELRILPCDERHRFHPECIDPFLLNV
SRLCPLCRLDLGNVGGRESDEMGREEYARREEERVRRHLRSLLHRRGANGSSASEGAGGG
SGPSAADEASGEGSTSTSTLRSRFAQYVVARRQRAFSGSGSGVGSGFVGLGRRRGSSSAT
ARAPAVDG