Protein Info for mRNA_6376 in Rhodosporidium toruloides IFO0880

Name: 14744
Annotation: K14811 DBP3 ATP-dependent RNA helicase DBP3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 623 PF00270: DEAD" amino acids 198 to 395 (198 residues), 150.4 bits, see alignment E=4.5e-48 PF00271: Helicase_C" amino acids 457 to 555 (99 residues), 98.9 bits, see alignment E=2.4e-32

Best Hits

Predicted SEED Role

"DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13)" (EC 3.6.4.13)

Isozymes

Compare fitness of predicted isozymes for: 3.6.4.13

Use Curated BLAST to search for 3.6.4.13

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (623 amino acids)

>mRNA_6376 K14811 DBP3 ATP-dependent RNA helicase DBP3 (Rhodosporidium toruloides IFO0880)
MAKADLTPEQLAAKQQRKADKKAKKAALKQSQQETDQANGADEVMAAPAGENGAQEETDK
ERRKREKKERKKRQREEDGEGQDAKVDGEEVKEGGEAKADGERKSKKSKKNKNKSAPAVS
ADTPSTPSTPASEPAPPVASTSTAPAPSAAEVDAFLSENNISYEPESAKTQFPPVLSFAS
LPLADGVRKGLSGFAKPTPIQSASFPLMLAGRDVIGIAETGSGKTVAFGVPAIEHILSLP
TSPAGKKGKSTAPVSVLIICPTRELAMQTHQNLSLISSALSPSLPSVCLYGGVPKPEQVK
ILRNDRPRIVVGTPGRLLDLAREGNLDLGKVSWLVLDEADRMLDKGFENDIREIIKLCLP
SPSSPLGPVKEEKGGPKARRTAMFSATWPMSVRKLAADFMTSPLRITVGSDSLTANSRVE
QVAIVVPDARQKETLLLTHLRDNGFSLNATKKGADKGKDRDKALVFALYKKEATRLFEFL
RMKGYEVACINGDMSQEKRTKSLEDFKLGKANILVATDVAARGLDIPKVELVINQTFPLT
IEDYVHRIGRTGRAGRTGKSITFFTEADKALAGQFIRLLRDSNAVVPPGLDQWGTTIKKT
THSAYGAHFRDDVKGTAKKITFD