Protein Info for mRNA_6378 in Rhodosporidium toruloides IFO0880

Name: 14746
Annotation: K11884 PNO1, DIM2 RNA-binding protein PNO1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 227 PF17903: KH_8" amino acids 53 to 128 (76 residues), 28.2 bits, see alignment E=8.4e-11

Best Hits

Swiss-Prot: 53% identical to PNO1_NEMVE: RNA-binding protein pno1 (pno1) from Nematostella vectensis

KEGG orthology group: K11884, RNA-binding protein PNO1 (inferred from 54% identity to rcu:RCOM_0267590)

Predicted SEED Role

"Putative RNA-binding protein COG1094"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (227 amino acids)

>mRNA_6378 K11884 PNO1, DIM2 RNA-binding protein PNO1 (Rhodosporidium toruloides IFO0880)
MIDPSQLPTPVVRTPIAQLEANAAASSSSDPNSLSFAPVTHHNASGLTQRRKISIPPHRM
TPLKRDWIKIYTPLVEECGLQVRMNVQKRQIEMKTSKHTPHPSALTRAADFLSAYCLGFA
VEDAIAMLRMEELYIESFEIKDIKTLHGDHLSRAIGRLAGHEGKARYAIEGATRTRIVLA
DTRIHILGTFSNIAVARSSISALVLGSPPGKVFANLSRYASLQRSRY