Protein Info for mRNA_6411 in Rhodosporidium toruloides IFO0880

Name: 14779
Annotation: BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1111 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 31 to 48 (18 residues), see Phobius details amino acids 196 to 216 (21 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1111 amino acids)

>mRNA_6411 BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M... (Rhodosporidium toruloides IFO0880)
MSTLLVGAGTGAATALSFAPATVQDLVREYWTAALALVGLCLLAYVTNPGPASFRTHLTS
LSFHTHLRRLSSSPSRPPSSSRSSSTSAPDTASVPTTATNGKESLLPTTQNAKRKGAAAD
ARPGAKSTPPSSSAAANRHILSFSNRISLSIRTPSYKFTSYYLFSTVYVPSSRPATAVAG
LTKQQQIQAQRKHPELSALLGLGGELWLGIFGRWYALKWWDNEEFEEEERRGRLEKGVKD
MVVEDDDKETESPSYSYPPSATVSGSSTPASHPLSHNPLAIDNRTSSPLAHSADSSIPPS
PTSKTSPAAARLTKRVFRAGQRRSSPTSLTRLKTKAVHAAREAAEAERVAADEAASALAA
AKEAFGGSSGSGSAGSAGMGGEAKGTTDPVLVELQAQLDELRASAAESEKRLQDELEVLR
GKKRDEDAFRAELKLKTKGLEEAKRAADATRVEAEKELNERKAVVKEAQARVDKVRAEIR
ALERKGIEAIERKEKKKRERKEREKKLREDVGKKRDELKDKEKGLEEVMHKIADMERKLE
VRRALLAGRRAELAQLGVAGMRGMGGPQGTAPMYGVAAPLNGPATATLGGVGAIANAFAA
PLGQGGYGRRNYPYVHPLSANNSRPTSIRSGHYDPHTGAFQSAPSSPTLSHPVLPLDDPS
PYGNANSTDADASSGWPTSFPAAPNGTSHALPHSSFLEHRLQHRAANGGIGDDDLPAHFL
PFDFDGLAPGAQDHSPPPRSARSGSVGDNSPGINANKPGRALALPMQYLDSGLLAGGAES
PALDGPLSPMTPHQTSLIPSQLFHMLDEDEDDDGLFVVPDSPTLRAGVGVTSPADWQGLG
LDVDEMGVSRRSSQEKVAKEESAGEANGVEVGAAAVSPSVLSLRANAFSPALAAPSSATT
SPLSPPPHSPFAPWATSSDVSTAAGVVGDGAAHDLPPRSLAPGVTLAHRLSPSQDLGDDL
PRAGLSLNPGAKAFAFPLVNAAHARTSSVPSPPSLAAAVRAARSGTVSSFPGSSLPSPVG
AGTSPSVTPSSLAVEPPIKSRMDFAHSSAGPVGSALLSARLSPGFDWPQTTSSPVFAAPN
LATSTAPEPAKTAPSSAFNPFDDDELLGPLR