Protein Info for mRNA_6434 in Rhodosporidium toruloides IFO0880

Name: 14802
Annotation: K01904 4CL 4-coumarate--CoA ligase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 553 transmembrane" amino acids 86 to 97 (12 residues), see Phobius details amino acids 237 to 260 (24 residues), see Phobius details PF00501: AMP-binding" amino acids 30 to 444 (415 residues), 322.6 bits, see alignment E=3.3e-100 PF13193: AMP-binding_C" amino acids 453 to 533 (81 residues), 52 bits, see alignment E=1.2e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (553 amino acids)

>mRNA_6434 K01904 4CL 4-coumarate--CoA ligase (Rhodosporidium toruloides IFO0880)
MTIYTSPYEPIAASEYHKGGVFDFIFAPERLDKRREQVAIIDAVTGAKTTYGELASESLR
FADGFTRTAGLKRGDTVLLFAPNSALYPILLFAGQAAGLAVSTANSSYLADELTHAIQLA
GANVVLASADLLKVAEKAAKDAGLANDKIYVVPATDGSLPSSLPSGMKPYTDLRGSPSFK
PVIPSEKEAKTNLAYLPFSSGTTGKAKGVALSAFNITSCVLQTQKTKGLFDTRDCVLSVL
PMYHIFGLVVMLHLTFFHGGTCVVLPKFDLPMALDSVQKYKCTTALLVPPIALAIAKHPI
VDKYDLSSLRYILCGAAPLSADLQEAVSQRLKGKTKVFQGLGMTETTSVGAIPAADKVVP
GSVGQLLSTMEARLVGDDGKDVKEGEAGELWLRGPNIMLGYYKNEKSTKETLTSDGWLMT
GDICTRDNDGWYRVIDRNKDLIKYKGFQVAPAELEGVLLASPLVADCAVIGIYSEEQATE
LPRAYIVPAPEHAKSPTLTKDVAKWVEEKLAPHKKLRGGVVVVDVIPKSPSGKILRKDLR
TAAAKEDMTKSKL