Protein Info for mRNA_6441 in Rhodosporidium toruloides IFO0880

Name: 14809
Annotation: K07200 PRKAG 5'-AMP-activated protein kinase, regulatory gamma subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 590 PF00571: CBS" amino acids 169 to 227 (59 residues), 22.3 bits, see alignment 7.3e-09 amino acids 371 to 402 (32 residues), 19 bits, see alignment (E = 7.9e-08) amino acids 440 to 501 (62 residues), 30.6 bits, see alignment E=1.9e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (590 amino acids)

>mRNA_6441 K07200 PRKAG 5'-AMP-activated protein kinase, regulatory gamma subunit (Rhodosporidium toruloides IFO0880)
MEPLTAAQPMTAPRSATQTPNTSLPSTANPSPTTSTATPPPKRRRPRPYRTRTTAGTNAP
ERTRKALEGIRAFLASKSCYDILPESFRLIVFDNKLGITKSLQALVTNGVVSAPLYDSTT
HRFAGMFTLADVVHLIQYYYLTAHKYENVVAEVEAFQLESLREIEQAIDVPPPPTISVHP
DQPLSDACAALVRTHARRLPLVDRDDQTGKETIISVLTQYRVLKFIAINCTHDCGRLDQS
IGSLGIGSYASWYQPPSDTASSAAPAPSAPSAQASASESNGEAGPSTAAASSEASSSTDN
RSTPTSTGTETPTNAYNAPHVDPSASSDSSAHLEGEHDFAMHDEAAHGKDGDDAHKSGGM
GLSDRYWPLSTATMQTSVFDVVHIFSERGISAVPIVDEDGVVLNLYETVDIVDLVRQNAY
QVLDSTIEDAINRRSPDFTGVMTCTPSDTLASILVFVRERRCHRFVIVEPEDVPARNGEP
ARKKGSLVGILSLSDVLRFLVGHENLKGMEVPGLGVHGLRGVHNDANAAGQEYDDAISVT
DASSVGGGSKTTSRRGSEATTDAGGSATDVRLAQQAAGLGLEDVIEAKAE