Protein Info for mRNA_6475 in Rhodosporidium toruloides IFO0880

Name: 14843
Annotation: KOG3442 Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 153 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF03656: Pam16" amino acids 5 to 139 (135 residues), 73.9 bits, see alignment E=6.5e-25

Best Hits

Swiss-Prot: 39% identical to TIM16_GIBZE: Mitochondrial import inner membrane translocase subunit TIM16 (PAM16) from Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)

KEGG orthology group: None (inferred from 44% identity to lbc:LACBIDRAFT_313591)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (153 amino acids)

>mRNA_6475 KOG3442 Uncharacterized conserved protein (Rhodosporidium toruloides IFO0880)
MSGARLIGQVLLIGSTIVGKAFSEAWKQAARNARAGGEAATGAAGGAARGGNVDALTRNH
GMTFDEAANILNVKRGAIQAGEETELQRMLKNFDHLFQANSPLTAEGKPHSSHYLQSKIV
RAKERLEAELAAAAKGAGEAAAAEAPKTPDGSA