Protein Info for mRNA_6477 in Rhodosporidium toruloides IFO0880

Name: 14845
Annotation: HMMPfam-Catalytic LigB subunit of aromatic ring-opening dioxygenase-PF02900,SUPERFAMILY--SSF53213

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 264 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF02900: LigB" amino acids 86 to 252 (167 residues), 73.4 bits, see alignment E=8.2e-25

Best Hits

Predicted SEED Role

"FIG074102: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (264 amino acids)

>mRNA_6477 HMMPfam-Catalytic LigB subunit of aromatic ring-opening dioxygenase-PF02900,SUPERFAMILY--SSF53213 (Rhodosporidium toruloides IFO0880)
MSRSLARLAAIVPALAVPSAKNTSRPFSTSAAGPSPLTFPASMGSFSSAASQGRHDGAEI
LDTPSEWRAALSALPSLSELSNVLPTIFLAHGSPMLIHPPHLANARSGPLLSIQGPEGPL
VAFLKDLGPALMEKYKPRAIVVLSAHWETEGGGVVTDYGDENPLLFDYYGFPKELYEVTF
KSRGDKAIAERVVQVLKEGGIESARLTNKLEPRGEDGRGFMGPGLDHGVFVPFKLMFNNE
APVPIIQVRLASSSIFVSSTLVSR