Protein Info for mRNA_6487 in Rhodosporidium toruloides IFO0880

Name: 14855
Annotation: K11237 BEM1 bud emergence protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 703 transmembrane" amino acids 391 to 406 (16 residues), see Phobius details PF07653: SH3_2" amino acids 47 to 100 (54 residues), 27.9 bits, see alignment 3e-10 PF00018: SH3_1" amino acids 49 to 96 (48 residues), 39.7 bits, see alignment 6e-14 amino acids 197 to 245 (49 residues), 44.8 bits, see alignment 1.5e-15 PF00787: PX" amino acids 384 to 489 (106 residues), 32.1 bits, see alignment E=1.9e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (703 amino acids)

>mRNA_6487 K11237 BEM1 bud emergence protein 1 (Rhodosporidium toruloides IFO0880)
MKGIRRSLNKDRIGAPAPGSVTKNGVPAAQALAQRPTAAPPPPKLVIRATTAYRAQTPQE
LSFNVGDFFHVVSDEGGEDWFDASNPVTNARGLVPADHFQVLGRNVRETAMQGQQAKKLS
SGSMSSGKSGSQGPMPGSGSWKPGAPAAVGAYSSSTKSSSASPYGAASSPTSPAGSTSSG
ARPPSQPAAKHQPLYGVVQYDFVAERPDELDAKKGEPIIVIAQSNHEWFVAKPIGRLGGP
GLIPVTFVEIQDMATGKPVENVEELIRSAVVPKVEEWKKMTAEYKQASIPLGRFDFSNQP
SAPASTSAASTSASSAAHPPDQYASYDSHQQQQHPQSYQSPASPHDQAHDQQGYDDGYEQ
RYSYSRERRQYGLVTSASVESFHQEEGSFWFHLRAFFSTGASLVLYRLYQDFFDFQVALM
AEFPVEAGRAPGDDGRTERILPMMPGPTDYEDEVVCAQRVHDLSIYLADLCALPEHIRGS
GLMYEFLVPRAGDVEVTPGNVQFSAEPSPVLSQGGMENQYGEVVDYLDQMDGRSGGPRGS
SGGQQQAYGADVADQMGRMSLNGGQYGGQQRQSQLQGHNGQHPYQQQQGGYYDAPSQPAL
PPMGNANQGVPFIKIKIFHRNTDDLIAIRVPPTVSHPALLDKVRERLGSDVTHLRYREEV
GSVAPTAGSQIVMAGGARLIMLENDEDLERWVRSGAKLVLYAD