Protein Info for mRNA_6489 in Rhodosporidium toruloides IFO0880

Name: 14857
Annotation: KOG0327 Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1057 PF00270: DEAD" amino acids 591 to 834 (244 residues), 60.8 bits, see alignment E=1.6e-20 PF00271: Helicase_C" amino acids 902 to 1012 (111 residues), 45.1 bits, see alignment E=1.1e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1057 amino acids)

>mRNA_6489 KOG0327 Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases (Rhodosporidium toruloides IFO0880)
MASSPSYQRAAPPASRASPSPHSPFFAPPERSNSSASTFSFGQPSSESFNLSPDDHRFSP
SLASSFGAVSSARPYPSLEQRSFRDSSLAGDVVVPRDERQNSLGASMRGGQAGAIGEGRK
SSVGAIGDGRKTTPSSTPAVERREEELLLGLPSGIFDANGSLAAPGSSNGAASEQGQKSR
PSSFILDVLPQTRERSGPPTPSLSLDSVSQPPPTAGVDFHTLPSPHSLAPSTYLNQTAAS
STASLSLSSSGNNLFTNSSRTSSPGPLDNSGLSVESLATKVNTLEGTVSGLSNLIATEFR
SLREEVGLLRSLVFQQQQNQPSSAAMGARGSVDRPGAESPVLTLRSPSPHPPPAFAQPIP
LSRASFTGSNASLLAQPATSPGAISPRSAAGGFFGADLERQPSQSNETSTVADQLKDKQI
KLLTAQVNSLSTTVSHLLANPGLAAAAASPSGHAPMRGMSLPLGSPALGLSGPATGLGIG
GGNGPLAGSGRPAAMLRTASGSGLARTASMRSASASGPSGLPNGSMDANSVTSASAWDGG
MSSPMIGSGPGGASPMLGSNPPGSLGSKWEVLGVGNDLFRAIAKYGLGPPTKIQGKAIPA
VVRGQDVVAQAPAIQERIQCYVVPAIQLVYTHANLAAQLAAAEGTAPTSPGVQVVIVTAT
VDQAAQAQRLAVGLGSGLGIRTSLCVGSSHDIQSELQNLLKAPPHILVGTPQKLLDLFSL
RTLPTASIRLLAIDETDQLIARNLSDHVINISRLLPATVTVPVSSGGGFPASSPVMSRTP
LPGSNGGFDSPFSAPMSRFGSTGGPTSSQGGPPPTLSTVERQMAIFSCTVPQDVLNFATS
MQLKEPVKVLVRRENAEGGGASPSMRSAKHFYMYLAVASNPAAQSKAPGAGRREASGSRE
WKLEALADFCEDSNFEHAVIFASSLESVEAVTYKLGSRAIDALALHSEMGPSARQQTIAK
FRSLAPNRPGLSSKRVLVVYDALSKSLSDVGQVPLVINFDMPRAVEDYVHRIACASGHNK
NSMVLNVVTPNEVELLRSIESFFRVTIRELPPNFASV