Protein Info for mRNA_6491 in Rhodosporidium toruloides IFO0880

Name: 14859
Annotation: KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1643 PF12828: PXB" amino acids 236 to 346 (111 residues), 34.5 bits, see alignment 1.9e-12 PF12825: DUF3818" amino acids 1203 to 1538 (336 residues), 293.4 bits, see alignment E=2.2e-91

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1643 amino acids)

>mRNA_6491 KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins (Rhodosporidium toruloides IFO0880)
MDVDDVGLARATSPSIMFPPARPASSLAGGGREQRETMSGEERQGHYRADSTGSVLFPSS
VPQTRQRSGSTLTGNERNGAVRESTSTVLPYTQPDYERPSSPRVQQDYPSPPAHNVLRKG
AGPFGSNKSTLRPHSRPSLPAGHPSRMSLGQYSTGEPTSALDYLYLEEERRKAAVVEAEN
AARAGRPMSASSRRTSHLNGGDFSPDGEIDFAGRDGDGDLRMHGQEDEQAAREDMNFSKE
EAWYFLRELVGQEIRHEEGLLWKMRDLDGRPGSPVDGDSYDGDDHDPQDAPILRYLIRHF
LLTLPLVRDTAEDGEIPSFWTDGLHPIIRAIHDADLSKPADRGFVGPVSRLYGSSMRNAL
ERFVAAGLKLSSASHVEPTPDAAGLQRQRSNASSQRSKARSAAMSGIETSAPPAQVDKER
PISSSTSTSIPSSSSWSQRFSFGRLFGSTATTPVKSNPVSVPPPIPTVHEAPPSQPPAPA
SETDSDRDGGLQPPKAGRPRPDSAVLPALPFINAQEPTDDEVAPRHTGSASSSRRASTVA
TRSRPLTPVGDRLGDPEMEELDLSRQATRTTNVTSAFDTASFVTAGEGTLASRTGHDGES
EAESEADETARFPGSLFFSSAKPGPPPTALDQSSSAPETPRMPATSFTPTLSNGLEPAEM
KKEGSSSTASGPIDGLEYYGSDAAATPKHEKEGFDLTSAAAGTQVPDTPKGKSRAFDDGE
VEPYVVDDTTTKLPPPVPAALPYASPTSSPRQSTPSPRRALPSSPPLRPISPPQTDNFSN
DLGAPPRSKSKFGLGSLLKKSHSRSASSSSSKSPTFAPASLNEVPASRRVPIASSSPPPR
KSEDFVAHMAIPHELLYPTAEGSADGHAEGTGGEVPEPVLLPKGGVKWPWDEPVPFLQGP
DFEQLKWGGFEADVIGVRKSLFSHSYIIRIRRPGRLDEYVLRTEAQWAKFARNMSKLFPH
AHIRRIPPGDPKHDTVIRPKPYLPTIGSAVSVVSGADQHTVPGTPISETPSRAHSRLMGG
IRAAAADPTAPPRASRTLTRSSLGSTFARSLRAQSTHTQGHASRRSSRKSRAMTSASTLP
PRPHSAAGSYRSYPMSFGSRFGVSAEIGKKMPPFDPRRRALRAWLRDVLSVKVVGHHKET
AAFLLLGSVVPRDSDVLDMAKREAIDDARRSARSIEAQRSIEKVRTARKQWSAVEREIIY
GDGLGDISEALKTTRSIARLPPKYQKVLEILRFDLAETLYETLVASETSGTTFTKLKALN
TSFPWFFVKQAMRLKSSKLMARALQDLLISRRFGGKSLLQKILAITLDDDPANLAKVMDL
LQVRIGSAVMVEKLNAFVHESREKKAIIRRYAEENKIELVLCIVRGADEPRLPGFELDRI
TQAQKSYRKWLKTNPTPYQKTHVKDSDVRLVLDLQAYLTLASRDRDSTILRQMLAKEDFA
AAVEVVLQPIVQLLRRTYRVGNGAQAVADLQKFVEQLILVVEALRSRVQDPQKSIRAIAR
LLERHQQNLYTFLHRVHRKETIIEEFLQWAWTASVFLRRGLAQPIDLDDLVPPSSSEDRL
FLLEELADLVSYQHDKRLHAFQAAARRHAGEVDADDPIIVEGDGKGRSRLDGVVEPRPTK
PVLEEVRFYAEAFRDQLKGVFAV