Protein Info for mRNA_6507 in Rhodosporidium toruloides IFO0880

Name: 14875
Annotation: K09503 DNAJA2 DnaJ homolog subfamily A member 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 PF00226: DnaJ" amino acids 7 to 65 (59 residues), 86.3 bits, see alignment E=1.8e-28 PF01556: DnaJ_C" amino acids 116 to 335 (220 residues), 146.8 bits, see alignment E=7.9e-47 PF00684: DnaJ_CXXCXGXG" amino acids 142 to 207 (66 residues), 60.8 bits, see alignment E=2e-20

Best Hits

Swiss-Prot: 58% identical to MAS5_SCHPO: Mitochondrial protein import protein mas5 (mas5) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K09503, DnaJ homolog subfamily A member 2 (inferred from 63% identity to cnb:CNBB1440)

Predicted SEED Role

"Chaperone protein DnaJ" in subsystem Heat shock dnaK gene cluster extended or Protein chaperones

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (410 amino acids)

>mRNA_6507 K09503 DNAJA2 DnaJ homolog subfamily A member 2 (Rhodosporidium toruloides IFO0880)
MVRDDRLYKLLGVKPDASDNDLKKAYRKLALKLHPDKNPDAGDEFKEVSHAYEVLSDPEK
RRLYDQFGEEGLNGGGGMGGMDPQDLFSQLFGGGGGFFGGGGRGRPSGPRKGKDLVHRIK
VSLEDLYKGKTSKLALQKHVICGKCKGKGGKEGAVKTCQSCKGQGVKIVLRQLGPMVQQI
QQPCNDCNGEGEIINAKDRCKDCNGKKVINERKVLEVFIDRGMKDGQTITFAGEADQAPG
IEPGDVIIVIEEKPHEVFKRKGDDLFAEVEIDLLTALAGGAFSLPHLDERAVLVRIHPGE
VIKPGSIKVIPDQGMPSYRHHEMGDLVVQINVKFPDSLDPAALAPLENILPPRPDLPTYP
PNVHVDEVEMTDASERRTKSGLGGSGGFGDDAMDTDEEGGAGPQVQCANS