Protein Info for mRNA_6513 in Rhodosporidium toruloides IFO0880

Name: 14881
Annotation: HMMPfam-Glycosyl transferase family 90-PF05686,SMART-Putative lipopolysaccharide-modifying enzyme.-SM00672

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 755 transmembrane" amino acids 108 to 131 (24 residues), see Phobius details PF05686: Glyco_transf_90" amino acids 368 to 660 (293 residues), 38.9 bits, see alignment E=2.7e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (755 amino acids)

>mRNA_6513 HMMPfam-Glycosyl transferase family 90-PF05686,SMART-Putative lipopolysaccharide-modifying enzyme.-SM00672 (Rhodosporidium toruloides IFO0880)
MSAQKDGLPAPPDSPAYASTSAYTPAALRTDHSAIPVNLSTTPIISPPPSPDADRKGSHF
PPTGSEKYGGYGGQGYGASAGEGDTLLRRSGFDDEERKGKRATSPLDTLVKLLLGMFGIL
FFIVLLVRLSFIPQHHAAKVASFMPSPVRSFLATVEDPSAPHPIVPLLTEARAKWDKKVS
SQSLTFDRATRTYKARYGMSPPPGFDKWFAFATQGRNHSLVDEYDQLMEDLQPFRSLTPQ
EIRRRTAELAQVPGISIVSIRSGVAQVHSKSGKWAPAHAFQQMIGAFVRDLPDMDIAINE
KPEGRVLPRRQKKVYQSDYGLEGDEPPINMTDPMIKPIIKNFTPEWKRDGSVWEAYRRSC
PTDSAARRLIETVRSAESNGALIVQGRATSKLEAPQTRRVKSKTVLPSTREMTFSHALDA
DFNVCDYPSLHTLHSAFYSDQRSIEYLYPVFSPSKPTGFADILIPSHHYWSPSSEFTYEA
EFRRGLTKNPTDIDWALKKNTSYWRGKVTRGADTPPGHGSSFQKQRLVKMANQETMATNR
VLVGFEPKTASITALSVPIAIANKATSDVAMACDPSLGECSYLRSLGYRVEPPAPMSEAW
KHKFVLDIDEIGFSPRFPALMESKSAVVKSSIQREFWRGWAQPWKHYIPLSSSYSELHNI
QTFFEGYPTSLVGKRGNHSAIAPTVLTRPSPLPELPVNVDGTPFDTDKALKEIAEAGAAW
KQRHLRKEDMEAYVFRLCLEYARLVTANEDSDEEA