Protein Info for mRNA_6517 in Rhodosporidium toruloides IFO0880

Name: 14885
Annotation: K12879 THOC2 THO complex subunit 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 1998 PF16134: THOC2_N" amino acids 99 to 736 (638 residues), 494.9 bits, see alignment E=6.4e-152 PF11732: Thoc2" amino acids 739 to 813 (75 residues), 99.5 bits, see alignment (E = 1.3e-32) PF11262: Tho2" amino acids 1128 to 1430 (303 residues), 286.5 bits, see alignment E=3.6e-89

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1998 amino acids)

>mRNA_6517 K12879 THOC2 THO complex subunit 2 (Rhodosporidium toruloides IFO0880)
MEADVPPALAVQQQVAQLLADFSQPDALTASLAALITSTEPASSLLLSTALNQLIGSTFS
LDPSRPDPARIAAYLHDSLFATIGRGDDGEPEEAKLERKAALADAIIDVAWQLDQQVDTQ
VPLMWRRANPSAPVESSANQEPAAERMEVDAAEPKADNLEAERTKQMAAAVEEARQRLAQ
IVKQLVQSGDLPREAVLERLELPFIRFLGILPDPNFFQRLEVRQRTALYYKQQKFNLLRE
ESEGYSKLVVELLGSMGPQLSPLDASSQESETARMRRAKSVNDRVKNLIGNFDLDPSRTL
DVLLDTFSDHVVEHWQFFLDFLAVSPWAPKRLGQAAKTGGNLDKGKGKAVPVDVGLESDE
GSDTIAQILGFKYAYYQGDEAPEVPANLYTTTALLIWHGFVKLTDLWAHLSPTDEDLAKL
ETKWRDEQAQLARSVGGANALAMAGALADDEAPAAKPAASTSVNGAASISTAPPPPPRDL
PNQKVGLLRALLTIGDITHAFFILGQFPFLVSAFPDIADLLNRLAHVSIDPAYASISISR
QHGQYADEFKAAKPKVTVDSKGEKKVTMPERKLALTSDAFPDPRRDWTFFFPRWQERVPR
ADDWAAVVHLLEEMYLPLVKVFVARDFKLFTKLIRIAVADLSTEFATHPRRVNWLDLLRV
HLVPAVSLLDSFTAAPLELWRVLSLYPIETRFEIYGEWKDVHYRRNPVLGVRKAEAERDV
KSLLRRLSTDNVKKLGKSFARIAHTNPAVIFAVALNQVQSYDNLIIPVVEACRYLTDLGY
DVMAYSILDALSASKPKTKEDGTSIAMWLQGLATFTGHVYRRWIAMAPSLWVILQYLVNQ
LVSGNSKDLVVLRELIGRMTGIEPFADLSDAQVLSLAGGKYLRNEVFQKTDIAKASARGQ
QDGLAKAKNRLASSILDKGLAMPLAVNIALQRQACLKTDAHLKSLSSLFDQNHAILFQYN
ELLQAITTPDQLAALVPSVVDLLGRFKLDAGIAFDLARPRLRVALREYDEKEAADLAAEA
AKKKQGLLAKLAKEKEKASPAPVDATTPAEGDDVKMADVKEEGEQEESGTPPPPDAKVEA
NGVVNGDAAMLDAVAAEVSLAPSTNPWHPGLVRVIEDIAELMPEGARKTIGAPFFATFWQ
LALYDIQYPKERYDAEISRLKLLQREASASTTLKPDDRRFFIDGVMAIANGLVEEAAKHM
NARSTVNRRLTREKAQWFSGVSTTDQRQQLVHDILQHCLIPRSRLSLPDAVFSHQMIKRL
HSMNTPQFHTIVLYDSLLTTQISPILYSCTENEARNFGRFLFDVLADLYRWHKDKSAYAE
EAANPQTSGFLRSMASTQAGEAGRIRGYYDHAEYQRAVLKWHTTMVQGFVDSFKSEEYMH
IKNSILVLTKIAPYFPLDYTVGEKLERAVSELVLAEKREDLQILAQGYKAVISKRRSQWI
NQPKPETTPAPSAPKSAPIKASPAVTPAASSKPSPDPAPAPTRSADTSRVPTGPKSSLPS
RPGLRNADSDVKPPSGPAASRSTSDAARRSEAPARTPVGSANDADKRQEPPTKPGSVATR
MEPPRGPAASSGSSRSQPIKADSGSRSSSRAASPRPTDNDRDRRSRDSRDADRGRQRSRD
RAREKEREQEREKERERDREREKEREKEREKEKEKERERARSVESSHSSRASRGDARDSR
ESRRDDRHDSRSDRRDDRRDDRRDDRRDSRDDRRGADRDRRSNDSKDARDSREPDRSNRS
SRGDERSSKPVDDRYASASSSSRRDDTRRDDRRTSDRAKLSREAEAREAEKEKQRERDRQ
REAQREKERKDERDRRVRDADDASRSQQSGRGLPAKPPPPSGDRLRPAPAHRQSEPKSEQ
DPSKSSLLERARATLPGGSSSTSPSGAASERNSPSEEPGPLSIKGRGSSRLFNSLTSTSG
GGSGGGSGGGSGGGGGGKREDDGSRKRSANSLADRLAPDSPKRARTDETPPRDSGRESSS
GRGDRGERGGGGRERSRR