Protein Info for mRNA_6531 in Rhodosporidium toruloides IFO0880

Name: 14899
Annotation: K19940 SEC2 Rab guanine nucleotide exchange factor SEC2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 899 PF06428: Sec2p" amino acids 193 to 271 (79 residues), 40.6 bits, see alignment E=1e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (899 amino acids)

>mRNA_6531 K19940 SEC2 Rab guanine nucleotide exchange factor SEC2 (Rhodosporidium toruloides IFO0880)
MAGSDHGEPSPSHTRRNSGTSDFQDAQDTTDDAVHAGTEGHGEAGEQEVTADSAGTDKRE
HAEGDAAIAHPDQHTVTPAAASTSSLNLPLKDPNPSLEPAAASNEELVAILRAQITDLAS
QVTSLNSKLVKSYTTRGELEDELHEKQEQERAMRKRVADLEKDKEKWEKEIEAGGWVEKT
HVQGEMQRLMAKVVEETKTRETAVQAHTALETEVENLTSNLFSEANKMVAFERLARALLE
EVQVGLKDTVLKLEKRDEEVATLKRRLAALGEPVEEDQVQEGESAEGDVGAIVFSDGEHL
TPIDTRVAASAGPSSAISPSHLSAPKLLTSVLPYHEFLAFVTYLRQTRVSALNRPPEGGS
FSHPALSTRSFAMDPSHPHYLTPAQLLAPHLLLSTHLSQPFLKRCVEEDSDPALRLDLAP
GLGFLSRRGVGTAVVDGTLLIEPLHSGIELPSDKCAMCGCSLEKWLPNSGNVRGAKTPTT
SVAAVNQTMRKLGSSLFSRSSSNSTPTLSSVSSSSPTAYHSHTSSTSSESFTFPPPQTSA
SHHPHDASLLVHLFRISDTSTQRYPICPSYCLARLRAVCEFWTYIRVIERGLLLEEGFRF
VRGRGDSNAKELGVRKVTDGIVSPGKKMKDEGEDGTDGLGISEVFRDGGHAWREGRGIGA
GNAEDCRARGGRRGSARRRGRGQAQHIERPPRRRGQAFKQLNDVALVGQGQRTAAAFPLL
GTQLACTISYAISSRLSARLDCAVDSSRSSPSTRRTSQAPISLGDGGRRRFYHWQCDWVG
RPVLERGCAAEGERVLDAGCGCRAGRWRGEQSGCAGVGAVIGHSNTTCHYISCNEGLTRG
CYSAISRLWQLGRQRSPRPRSLLLCLALHTVSCSSIDSHNVSGTLYRIQRPPQPLSRVR