Protein Info for mRNA_6534 in Rhodosporidium toruloides IFO0880

Name: 14902
Annotation: HMMPfam-Opy2 protein-PF09463

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 832 transmembrane" amino acids 58 to 81 (24 residues), see Phobius details PF09463: Opy2" amino acids 5 to 39 (35 residues), 30 bits, see alignment (E = 2.7e-11)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (832 amino acids)

>mRNA_6534 HMMPfam-Opy2 protein-PF09463 (Rhodosporidium toruloides IFO0880)
MSSSCLSCSDSISPCPVCPGGQVCIQTGRSCTVCPKNICVDDGSKGNSGSGGPSAGATAG
GAVGGVLGVAAILAAVYFFWWRPRGLAASRKRYSQHLAKRQSKLSEKRKTGQYTDADDGA
GQTDRATKRTSVHLNIDAGAEGAVNRRTTSPLREGGALISGRTSEDDNPFGDQNRSSIGS
FNDTSSIHDSEFSFRSSHTNVIPIAYIPPHSSSMSIADAQRGGFGESQAERPLPPRSAAV
RASIPTSMASRDSLALAGAEVIELNPLPPVLTPDTPAVPHGTTANGAPIRPPRSPGLDLN
LPKISSPLAGSSLVGSPDGQIRPSSYIASGNTSPTFLTPPSSATPRGMSVLAEQQSRARS
QQSHLSTITTRSGTSTMSYILDPPQIITPVSGQGVRRVELHQGQAGLVKIGSAAAVPLPA
SPTSPTSSVNPFDDSNAAAARRHSRMSSQDTVRGGQGAGEDGFDSRSGTSMTNSSRWTAS
SLASEASEAVQFLQGQTVTFTNLNSPDPPVLLANRRLLNTASGASFDVPQSARSSEAFDT
GSHVRPLLERSAWSSSTSAASTTGGTQSTAMSPSQSRDSTATATSGHISVLEGIPFIASP
SPADDRMSTRGPSTSSVSLGLPVNVTAPLDGAGAPSPSLAAPTDSILPSSASSASITIAP
PSPRPSIHSATDADDSDPLPAPFLPFAGQRPTSTASSTGGTRNGPNGERVQSSAISVRSG
FGSGLSQIPFQLGFPSGFGEDGFSDAGGDDEDATRRSLLSARDSRFPPSEVGDVEPNAEE
DEDASNPFGSHAEVDDSSADKAATADPRASMDSLALAVGLSANLDAQAGGQS